View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_6 (Length: 737)
Name: NF18278_low_6
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 730
Target Start/End: Complemental strand, 43397592 - 43396881
Alignment:
| Q |
18 |
cacattcatcaattattcatttgaaccaacctcgttagtcgcgcttaagacgtcttgtccaaccatgaggacgctcagtttaccagtcaccaaaaggctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43397592 |
cacattcatcaattattcatttgaaccaacctcgttagtcgcgcttaagacgtcttgtccaaccatgaggacgctcagtttaccagtcaccaaaaggctt |
43397493 |
T |
|
| Q |
118 |
tccatgtccacctgtaaa-caatcttcaacactatatcagcaaactaagtataagcctgctaaattatttacaatgtccataaaaaattttcaagtgatc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43397492 |
tccatgtccacctgtaaagcaatcttcaacactatatcagcaaactaagtataagcctgctaaattatttacaatgtccataaatttttttcaagtgatc |
43397393 |
T |
|
| Q |
217 |
atgagttaataatttctgtttttattccaacaaattacaaaaccatgtttgaaggcaataacaaatcgacacnnnnnnngtcatcaaggcaaagctcaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
43397392 |
atgagttaataatttctgtttttattccaacaaattacaaaaccatgtttgaaggcaataacaaatggacacaaaaaaagtcatcaaggcaaagctcaag |
43397293 |
T |
|
| Q |
317 |
gagatgaactaagaagtttgaaatagttcgataa--------atgattcaaattccgactgttaacataacatactaaaatcctatatggcccctacact |
408 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |
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| T |
43397292 |
gagatgaactaagaagtttgaaatagttcgataaagagatatatgattcaaattccgactattaacataacatactaaaatcctatatgg----tccact |
43397197 |
T |
|
| Q |
409 |
tcagattgaaaatatgttcgtgtctgacggaattggtgtacaacaacacatgtgattacattcaattactactattttcttaaa-tgattactaatgttt |
507 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
43397196 |
tcagattgaaaatatgttcgtgtccgacggaattggtgtacaacaacacatgtgattacattcaattactgctattttcttaaattgattactaatgttt |
43397097 |
T |
|
| Q |
508 |
atgtgtcattgtcgtatctgtgtcnnnnnnnctagagtaaagacacaatttagtctctcacaattttatcacggtctaatttaatccattacttnnnnnn |
607 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
43397096 |
atgtgtcattg-------tgtgtcaaaaaaactagagtaaagacacaatttagtctctcacaattttatcacggcctagtttaatccattacttaaaaaa |
43397004 |
T |
|
| Q |
608 |
ncattaaagtagtccttgatattttcaaactggagacaaattagtcctgaactcattataacagaggatttatttatcttcaatttgaaaatgtcaatga |
707 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
43397003 |
acattaaagtagtccttgatattttcaaactggggataaattagtcctgaactcattatacaagaggacttatttatcttcaatttgaaaatgtcaatga |
43396904 |
T |
|
| Q |
708 |
ctagtttggtattatttcttctc |
730 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
43396903 |
ctagtttggtattatttcttctc |
43396881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 27131678 - 27131731
Alignment:
| Q |
452 |
caacacatgtgattacattcaattactactattttcttaaatgattactaatgt |
505 |
Q |
| |
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||||||||||| ||||||||||||||| | |||||||||||| ||||| ||||| |
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| T |
27131678 |
caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt |
27131731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 515
Target Start/End: Complemental strand, 7422216 - 7422153
Alignment:
| Q |
452 |
caacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtca |
515 |
Q |
| |
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|||||||| | |||||||||||| ||| ||||||||| |||| ||||| ||||| ||||||||| |
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| T |
7422216 |
caacacatataattacattcaatcacttctattttctcaaattattacaaatgtctatgtgtca |
7422153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 724
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
| Q |
659 |
ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt |
724 |
Q |
| |
|
|||||||||||||||| | |||||| || ||||||||||||||||| | ||||||||||||||||| |
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| T |
32358605 |
ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt |
32358539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 18542218 - 18542264
Alignment:
| Q |
454 |
acacatgtgattacattcaattactactattttcttaaatgattact |
500 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
18542218 |
acacatgtgattacattcaattacttgtattttctcaaattattact |
18542264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 2468478 - 2468531
Alignment:
| Q |
452 |
caacacatgtgattacattcaattactactattttcttaaatgattactaatgt |
505 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||| ||||| ||||| |
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| T |
2468478 |
caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt |
2468531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 524
Target Start/End: Original strand, 36552252 - 36552325
Alignment:
| Q |
451 |
acaacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgtat |
524 |
Q |
| |
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|||||||| |||||| ||||||| || | || |||| || |||||||||| |||| |||||||||||||||||| |
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| T |
36552252 |
acaacacacgtgatttcattcaagtatttctgttttttttaatgattacttatgtctatgtgtcattgtcgtat |
36552325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 499
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
| Q |
458 |
atgtgattacattcaattactactattttcttaaatgattac |
499 |
Q |
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| T |
2445459 |
atgtgattacattcaatcacttccattttcttaaatgattac |
2445500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Original strand, 18992471 - 18992512
Alignment:
| Q |
464 |
ttacattcaattactactattttcttaaatgattactaatgt |
505 |
Q |
| |
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|||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
18992471 |
ttacattcaattactattattttctaaaattattactaatgt |
18992512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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