View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_66 (Length: 248)

Name: NF18278_low_66
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_66
NF18278_low_66
[»] chr3 (6 HSPs)
chr3 (2-232)||(18871226-18871449)
chr3 (2-138)||(19395707-19395835)
chr3 (160-190)||(19395672-19395702)
chr3 (158-187)||(14032926-14032955)
chr3 (164-228)||(19402265-19402330)
chr3 (149-185)||(17105260-17105296)
[»] chr5 (2 HSPs)
chr5 (158-203)||(13398352-13398398)
chr5 (149-185)||(28735838-28735873)
[»] chr8 (2 HSPs)
chr8 (149-187)||(29651646-29651684)
chr8 (153-187)||(31244012-31244046)
[»] chr2 (1 HSPs)
chr2 (147-185)||(22556234-22556272)
[»] chr6 (2 HSPs)
chr6 (148-185)||(29236255-29236292)
chr6 (159-187)||(32931514-32931542)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 18871226 - 18871449
Alignment:
Q  2 tgaaccaattattattcttt-aatttatccagacaggcacatacataaatttcatcggagcactgcttcacttcactggaagaggcatatctatcaatca 100  Q
    |||||||||||||||||||| ||||||||||||||        ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  18871226 tgaaccaattattattcttttaatttatccagaca--------cataaatttcatcggagtactgcttcacttcactggaaggggcatatctttcaatca 18871317  T
Q  101 caggcacatacagatacactagacatgacacaaacacacacgaaaacgtagacactagtaataatttaagaaaatagaagtgattaatgtagccatatgt 200  Q
    |||||||||||| |||||  |||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||    
T  18871318 caggcacatacatatacataagacatgacacaaatacacaccaaaacgtagacatttgtaataatttaagaaaatagaagtgattaatgtagtcacatgt 18871417  T
Q  201 gttagttttgtgtcgatattggacattgacac 232  Q
    |||||| |||||||||||||||||||||||||    
T  18871418 gttagtgttgtgtcgatattggacattgacac 18871449  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 19395835 - 19395707
Alignment:
Q  2 tgaaccaattattattctttaatttatccagacaggcacatacataaatttcatcggagcactgcttcacttcactggaagaggcatatctatcaatcac 101  Q
    ||||||||| |||||||| |||||||||||||||        ||||||||||||||||| | ||||||||||||||||||| |  ||| |||||||||||    
T  19395835 tgaaccaataattattctataatttatccagaca--------cataaatttcatcggagtagtgcttcacttcactggaagcgatataactatcaatcac 19395744  T
Q  102 aggcacatacagatacactagacatgacacaaacaca 138  Q
     | |||||||  | |||| ||| |||||||| |||||    
T  19395743 tgacacatacttagacacaagatatgacacagacaca 19395707  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Complemental strand, 19395702 - 19395672
Alignment:
Q  160 aataatttaagaaaatagaagtgattaatgt 190  Q
    |||||||||||||||||||||||||||||||    
T  19395702 aataatttaagaaaatagaagtgattaatgt 19395672  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 14032926 - 14032955
Alignment:
Q  158 gtaataatttaagaaaatagaagtgattaa 187  Q
    ||||||||||||||||||||||||||||||    
T  14032926 gtaataatttaagaaaatagaagtgattaa 14032955  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 19402330 - 19402265
Alignment:
Q  164 atttaagaaaatagaagtgattaa-tgtagccatatgtgttagttttgtgtcgatattggacattg 228  Q
    |||||| ||||||||||||||||| |||| ||||| ||||   | |||||||||||||||||||||    
T  19402330 atttaataaaatagaagtgattaaatgtaaccataagtgtctctattgtgtcgatattggacattg 19402265  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 17105260 - 17105296
Alignment:
Q  149 tagacactagtaataatttaagaaaatagaagtgatt 185  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  17105260 tagacactaataataatttaagaaaataaaagtgatt 17105296  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 13398352 - 13398398
Alignment:
Q  158 gtaataatttaagaaaatagaagtgatt-aatgtagccatatgtgtt 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  13398352 gtaataatttaagaaaatagaagtgattaaatgtagccatatgtgtt 13398398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 28735873 - 28735838
Alignment:
Q  149 tagacactagtaataatttaagaaaatagaagtgatt 185  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28735873 tagacact-gtaataatttaagaaaatagaagtgatt 28735838  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 29651684 - 29651646
Alignment:
Q  149 tagacactagtaataatttaagaaaatagaagtgattaa 187  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  29651684 tagacgctagtaatattttaagaaaatagaagtgattaa 29651646  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 31244012 - 31244046
Alignment:
Q  153 cactagtaataatttaagaaaatagaagtgattaa 187  Q
    |||||||||||||||||||||||| ||||||||||    
T  31244012 cactagtaataatttaagaaaatataagtgattaa 31244046  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 22556234 - 22556272
Alignment:
Q  147 cgtagacactagtaataatttaagaaaatagaagtgatt 185  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  22556234 cgtagacacaggtaataatttaagaaaatagaagtgatt 22556272  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 29236255 - 29236292
Alignment:
Q  148 gtagacactagtaataatttaagaaaatagaagtgatt 185  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  29236255 gtagacactaataataatttgagaaaatagaagtgatt 29236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 32931542 - 32931514
Alignment:
Q  159 taataatttaagaaaatagaagtgattaa 187  Q
    |||||||||||||||||||||||||||||    
T  32931542 taataatttaagaaaatagaagtgattaa 32931514  T

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