View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_67 (Length: 246)
Name: NF18278_low_67
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25833225 - 25833455
Alignment:
| Q |
1 |
gcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaatcggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaa |
100 |
Q |
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| T |
25833225 |
gcagaaggagtagaagatccaaaatcaagagaatccgaatgaggaatcggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaa |
25833324 |
T |
|
| Q |
101 |
gaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactgaatttctccaaggtggtaacccaccattagctctaagaaaattcccatatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25833325 |
gaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactgaatttctccaaggtggtaacccaccattagctctaagaaaattcccatatct |
25833424 |
T |
|
| Q |
201 |
tgttttcagcttaacctgcgcaccttctcta |
231 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25833425 |
cgttttcagcttaacctgcgcaccttctcta |
25833455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25567342 - 25567572
Alignment:
| Q |
1 |
gcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaatcggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25567342 |
gcagaaggagtagaagatccgaaatcaagagagtcggaatgaggaatcggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaa |
25567441 |
T |
|
| Q |
101 |
gaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactgaatttctccaaggtggtaacccaccattagctctaagaaaattcccatatct |
200 |
Q |
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| T |
25567442 |
gaatccaatcctgagtagcacttctatgaggaatatcatgcgtaacagaatttctccaaggcggtaacccaccattagctctaagaacattcccatctat |
25567541 |
T |
|
| Q |
201 |
tgttttcagcttaacctgcgcaccttctcta |
231 |
Q |
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| T |
25567542 |
cgttttcagcttaacctgcgcagctactcta |
25567572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25432822 - 25433050
Alignment:
| Q |
1 |
gcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaatcggag---gaggaggtggatttccaacatgaatctcaagaacatcaacatccc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25432822 |
gcagaaggagtagaagatccaaaatcaagagaatcagaatgaggaattggaggaggaggaggaggatttccaacatgaatctcaagaacatcaacatccc |
25432921 |
T |
|
| Q |
98 |
aaagaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactgaatttctccaaggtggtaacccaccattagctctaagaaaattcccata |
197 |
Q |
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| T |
25432922 |
aaagaatccaatcctgagtagcacttctatgatgaatctcaagcg-aactgaatttctccaaggcagtaacccaccattacctctaagaaaattcccata |
25433020 |
T |
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| Q |
198 |
tcttgttttcagcttaacctgcgcaccttc |
227 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
25433021 |
tcttgttttcagcttaacctgtgcaccttc |
25433050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 24884343 - 24884165
Alignment:
| Q |
49 |
ggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaagaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactg |
148 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
24884343 |
ggaggaggaggaggatttccaacatgaatctcaagaacatcaacatcccaaagaatccaatcctgagtagcacttctatgatgaatctcaagcgtaactg |
24884244 |
T |
|
| Q |
149 |
aatttctccaaggtggtaacccaccattagctctaagaaaattcccatatcttgttttcagcttaacctgcgcaccttc |
227 |
Q |
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| T |
24884243 |
aatttctccaaggcggtaacccaccattacctctaagaatgttcccatatcttgttttcagcttaacctgtgcaccttc |
24884165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 24884436 - 24884351
Alignment:
| Q |
49 |
ggaggaggaggtggatttccaacatgaatctcaagaacatcaacatcccaaagaatccaatcctgagtagcacttctatgaggaat |
134 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24884436 |
ggaggaggaggaggatttccaacatgaatctcaagaacatcaacatcccaaagaatccaatcctgagtagcacttctatgatgaat |
24884351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 25467327 - 25467385
Alignment:
| Q |
173 |
cattagctctaagaaaattcccatatcttgttttcagcttaacctgcgcaccttctcta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25467327 |
cattagctctaagaaaattcccatatctcgttttcagcttaacctgcgcaccttctcta |
25467385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 16434104 - 16433961
Alignment:
| Q |
69 |
aacatgaatctcaagaacatcaacatcccaaagaatccaatcctgagtagcacttctatgaggaatatcatgcgtaactgaatttctccaaggtggtaac |
168 |
Q |
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|||||||||||||| ||||||||||||||| | || |||||| |||||| || | ||||| |||||||||||||| || | ||| ||||| ||||| ||| |
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| T |
16434104 |
aacatgaatctcaacaacatcaacatcccacaaaacccaatcttgagtaacagtcctatgcggaatatcatgcgtcacagtattcctccacggtggcaac |
16434005 |
T |
|
| Q |
169 |
ccaccattagctctaagaaaattcccatatcttgttttcagctt |
212 |
Q |
| |
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|||||||| ||||||||||||||||||| || || |||||||| |
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| T |
16434004 |
ccaccattccctctaagaaaattcccatacctcgtcttcagctt |
16433961 |
T |
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