View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_68 (Length: 245)
Name: NF18278_low_68
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1668647 - 1668873
Alignment:
| Q |
1 |
tgcaagaacaccctttgttagagaattatctccatagccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaag |
100 |
Q |
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| T |
1668647 |
tgcaagaacaccctttgttagagaattatctccgtagccataggtataattgcaacgcttctcaggagaacacacacctgtgtcaagtttgtgacacaaa |
1668746 |
T |
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| Q |
101 |
ggagaatcacatgagatattattgtaagtggatgattttagaggatcaaacatgggttttatttgtttgtagcaccctaaacaaggtgcacattggatcc |
200 |
Q |
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| T |
1668747 |
ggagaatcacatgagatgttattgtaagtggatgattttagaggatcaaacatgggttttatttgtttgtagcaacctaaacaaggtgcacattggatcc |
1668846 |
T |
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| Q |
201 |
atataagatcacttcctgtgtctacaa |
227 |
Q |
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| T |
1668847 |
atataagatcacttcctgtgtctacaa |
1668873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1680183 - 1680407
Alignment:
| Q |
1 |
tgcaagaacaccctttgttagagaattatctccatagccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaag |
100 |
Q |
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||||||||||||||| ||||||||| ||||| |||||||||| ||||||| ||| || ||||||||||||||| ||||| ||| | ||| | ||||| |
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| T |
1680183 |
tgcaagaacacccttggttagagaactatctgcatagccataggtgtaatcgcaccgtttctcaggagaacactcacctatgtaaggtttgtagcacaat |
1680282 |
T |
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| Q |
101 |
ggagaatcacatgagatattattgtaagtggatgattttagaggatcaaacatgggttttatttgtttgtagcaccctaaacaaggtgcacattggatcc |
200 |
Q |
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| T |
1680283 |
ggagaatcacatgagatattagtgtatgttgaagattttagaggatcaaacatagggtttatttggttgtagcaccctaaacaaggtacacattggaccc |
1680382 |
T |
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| Q |
201 |
atataagatcacttcctgtgtctac |
225 |
Q |
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| T |
1680383 |
atatcaggtcacttcccgtgtctac |
1680407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 1661385 - 1661499
Alignment:
| Q |
1 |
tgcaagaacaccctttgttagagaattatctccatagccatatgtgtaattgcaacgcttctcaggagaacacacacctgtgtcaagttgatgacacaag |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1661385 |
tgcaagaacaccctttgttagagaattatctccgtagccataggtataattgcaacgcttctcaggagaacacacacctgtgtcaagtttgtgacacaaa |
1661484 |
T |
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| Q |
101 |
ggagaatcacatgag |
115 |
Q |
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| T |
1661485 |
ggagaatcacatgag |
1661499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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