View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_69 (Length: 243)
Name: NF18278_low_69
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43458203 - 43458435
Alignment:
| Q |
1 |
aaaaaacgtaaacagagaaaacatgatatttgaccacagagtttggtctattgtgcatacgtcttcgactgcaatacaacttgtgtttaaatactcgccc |
100 |
Q |
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| T |
43458203 |
aaaaaacgtaaacagagaaaacatgatatttgaccacagagtttggtctattgtgcatacgtcttcgactgcaatacaacttgtgtttaaatactcgccc |
43458302 |
T |
|
| Q |
101 |
tgctcgagcgacctgcctacttatcagtaaactatgagccgtaccaaacaaacnnnnnnnntataattctagctaaactttaaaccatagttgaagttat |
200 |
Q |
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| T |
43458303 |
tgctcgagcgacctgcctacttatcagtaaactatgagccgtaccaaacaaacgaaaaaaatataattctagctaaactttaaaccgtagttgaagttat |
43458402 |
T |
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| Q |
201 |
ttagttttatatttacttgtgttattccctttg |
233 |
Q |
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| T |
43458403 |
ttagttttatatttacttgtgttattccctttg |
43458435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 4557146 - 4557178
Alignment:
| Q |
108 |
gcgacctgcctacttatcagtaaactatgagcc |
140 |
Q |
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| T |
4557146 |
gcgacctgcctacttatcaataaactatgagcc |
4557178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 34372551 - 34372583
Alignment:
| Q |
106 |
gagcgacctgcctacttatcagtaaactatgag |
138 |
Q |
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| T |
34372551 |
gagcgacctgccaacttatcagtaaactatgag |
34372583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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