View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_7 (Length: 723)
Name: NF18278_low_7
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 389 - 600
Target Start/End: Original strand, 42518334 - 42518545
Alignment:
| Q |
389 |
tgtccataacaaataacgtggtaataatttaactgctaaaaaagttgtttctgttctgtcttcgtgaatcttcacgttgtgaatttacttcagacataga |
488 |
Q |
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| T |
42518334 |
tgtccataacaaataacgtggtaataatttaactgctaaaaaagttgtttctgttctgtcttcgtgaatcttcacgttgtgaatttacttcagacataga |
42518433 |
T |
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| Q |
489 |
gagagacagtggaaaagcttaaagctgctgtataaaaaccatcagtgtctactagannnnnnnnnnnnnnnnnncttgtgagcgagaaagtaaagtacgt |
588 |
Q |
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| T |
42518434 |
gagagacagtggaaaagcttaaagctgctgtataaaaaccatcagtgtctactagagagtgtgtgtgtgtgtgtcttgtgagcgagaaagtaaagtacgt |
42518533 |
T |
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| Q |
589 |
gtacctgcttga |
600 |
Q |
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|||||||||||| |
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| T |
42518534 |
gtacctgcttga |
42518545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 190 - 324
Target Start/End: Complemental strand, 42518838 - 42518712
Alignment:
| Q |
190 |
ccggatctggattaattggtatcgaaaatgcaaactgcatggtaatatggtatgaacttggaatttgaaagcttacatataaaatattttagctgagaaa |
289 |
Q |
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| T |
42518838 |
ccggatctggattaattggtatcgaaaatgcaaactgcatggtt--------tgaacttggaatttgaaagcttacatataaaatattttagctgagaaa |
42518747 |
T |
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| Q |
290 |
ctctatgataaaatttcagctatgcatgcatagtt |
324 |
Q |
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| T |
42518746 |
ctctatgataaaatttcagctatgcatgcatagtt |
42518712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 42519009 - 42518916
Alignment:
| Q |
19 |
aatccttatcatcttcttcatcactttcaataataaaactgttctctgaagctactgagttattcatcttcactcttcaccaactattcacctt |
112 |
Q |
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| T |
42519009 |
aatccttatcatcttcttcatcactttcaataataaaactgttctctgaagctactgagttattcatcttcactcttcaccaactattcacctt |
42518916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 658 - 723
Target Start/End: Original strand, 42518603 - 42518668
Alignment:
| Q |
658 |
aaacaaaaagcacaagtgtcgttcatgctatggtttttctgattcttaattaattccctttttggt |
723 |
Q |
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| T |
42518603 |
aaacaaaaagcacaagtgtcgttcatgctatggttcttctgattcttaattaattccctttttggt |
42518668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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