View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_75 (Length: 236)

Name: NF18278_low_75
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_75
NF18278_low_75
[»] chr3 (6 HSPs)
chr3 (17-105)||(34681326-34681415)
chr3 (137-236)||(34681195-34681294)
chr3 (134-215)||(42841758-42841839)
chr3 (134-195)||(51206145-51206206)
chr3 (140-236)||(52474398-52474493)
chr3 (202-230)||(51459734-51459762)
[»] chr8 (9 HSPs)
chr8 (139-210)||(6254315-6254386)
chr8 (139-206)||(24686595-24686662)
chr8 (134-211)||(36696570-36696647)
chr8 (140-211)||(40737057-40737128)
chr8 (142-195)||(11597638-11597691)
chr8 (134-211)||(15552966-15553043)
chr8 (139-208)||(27422571-27422640)
chr8 (157-236)||(45394054-45394133)
chr8 (139-211)||(41015895-41015967)
[»] chr4 (10 HSPs)
chr4 (153-236)||(49632786-49632869)
chr4 (139-236)||(55826279-55826376)
chr4 (141-212)||(42056269-42056340)
chr4 (134-215)||(38376835-38376916)
chr4 (140-215)||(21443959-21444034)
chr4 (139-236)||(55762471-55762568)
chr4 (140-215)||(24786315-24786390)
chr4 (140-215)||(24821874-24821949)
chr4 (170-236)||(37012520-37012586)
chr4 (134-211)||(31862491-31862568)
[»] chr2 (5 HSPs)
chr2 (134-211)||(14941663-14941739)
chr2 (139-215)||(16464097-16464173)
chr2 (134-211)||(28428981-28429058)
chr2 (139-207)||(18711284-18711352)
chr2 (198-236)||(6599448-6599486)
[»] chr7 (5 HSPs)
chr7 (140-215)||(29127329-29127404)
chr7 (138-236)||(40236733-40236831)
chr7 (134-210)||(2736769-2736845)
chr7 (141-215)||(507280-507354)
chr7 (157-233)||(30703782-30703858)
[»] chr1 (11 HSPs)
chr1 (139-235)||(13533883-13533979)
chr1 (139-208)||(39097070-39097139)
chr1 (134-214)||(47312049-47312128)
chr1 (139-210)||(38508286-38508357)
chr1 (134-196)||(15351128-15351190)
chr1 (139-212)||(36781914-36781987)
chr1 (149-235)||(19068143-19068229)
chr1 (149-235)||(19116033-19116119)
chr1 (139-205)||(20560663-20560729)
chr1 (134-215)||(14258153-14258234)
chr1 (139-211)||(4636554-4636626)
[»] chr6 (2 HSPs)
chr6 (139-215)||(21809684-21809760)
chr6 (139-212)||(13665135-13665208)
[»] chr5 (3 HSPs)
chr5 (139-212)||(28414277-28414350)
chr5 (139-195)||(27299760-27299816)
chr5 (139-212)||(8008310-8008383)
[»] scaffold0027 (1 HSPs)
scaffold0027 (139-208)||(39636-39705)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 34681415 - 34681326
Alignment:
Q  17 tatgatgtttacttgaacttcttatattttcctgtaaatatttaaataagggttgtaataaccggtg-ccccgggcattggttaaggtat 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34681415 tatgatgtttacttgaacttcttatattttcctgtaagtatttaaataagggttgtaataaccggtgtccccggtcattggttaaggtat 34681326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 34681294 - 34681195
Alignment:
Q  137 aattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |   |||||||||| |||||    
T  34681294 aattttttgacttttgagaaattgattaaacaattttcgatgtaaaagatactatatttgtttccttaaccagtgcccccggagcattggttaatatttc 34681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 42841758 - 42841839
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| || |||| || |||||||    
T  42841758 gacacttttttgacttttgagaaattgattacacagttttcgatgtaaaagctagtatatttgcttccttatccggtgcccc 42841839  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 51206145 - 51206206
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatattt 195  Q
    |||| ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  51206145 gacacttttttgacctttgagaaattgattacacagttttcgatgcaaaagctactatattt 51206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 52474398 - 52474493
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    ||||| ||||| |||||||| |||  ||| ||||||||| |||| | ||||||||||||| ||||||||||||||| | ||||  ||||||||||||    
T  52474398 tttttaactttagagaaattaattgcacagttttcgatgcaaaaac-actatatttgtttccttaaccagtgccccagagacaccggttaacatttc 52474493  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 51459734 - 51459762
Alignment:
Q  202 ttaaccagtgcccctgtgacattggttaa 230  Q
    |||||||||||||||||||||||||||||    
T  51459734 ttaaccagtgcccctgtgacattggttaa 51459762  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 6254386 - 6254315
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagt 210  Q
    ||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||    
T  6254386 ttttttgacttttgaaaaattgattacacagttttcgatgcaaaagctactatatttgtttccttaaccagt 6254315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 24686662 - 24686595
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaac 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||    
T  24686662 ttttttgacttttgagaaattgattacacaattttcgatgtaaaaactattatatttgtttccttaac 24686595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 36696570 - 36696647
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||| ||||||||||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||| |||| ||||||    
T  36696570 gacacttttttgacttttgacaaattgattacacatttttcgatgcaaaaactactatatttgtttccttacccagtg 36696647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 40737128 - 40737057
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||||||||||||| |||||||||| || |||| ||||| |||| |||||||||||| || |||||||||||    
T  40737128 tttttgacttttgataaattgattacacgatttccgatgcaaaaactactatatttgcttccttaaccagtg 40737057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 11597691 - 11597638
Alignment:
Q  142 tttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatattt 195  Q
    |||||||||||||||||| |||| | ||||||||||| |||| |||||||||||    
T  11597691 tttgacttttgagaaattaattatataattttcgatgcaaaaactactatattt 11597638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 15553043 - 15552966
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||| |||||||||||| ||   |||||||| ||||||||| ||| ||||| ||||||||||| || |||||||||||    
T  15553043 gacacttttttgactttagaagcattgattatacaattttcaatgcaaaagttactatatttgcttccttaaccagtg 15552966  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 27422571 - 27422640
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaacca 208  Q
    |||||||||||||||   |||||||| ||||||||| ||| |||| ||||||| ||||||| ||||||||    
T  27422571 ttttttgacttttgaagcattgattacacaattttcaatgcaaaaactactatgtttgtttccttaacca 27422640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 45394133 - 45394054
Alignment:
Q  157 attgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||||| |||| |||| ||||||||  ||||||||| | | |||||||||||||| | | |||| |||||||||||||    
T  45394133 attgattacacaactttcaatgtaaaacttactatattcgctctcttaaccagtgcctccgggacactggttaacatttc 45394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 41015967 - 41015895
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||||||| |||||| |||||||||| | | ||||||||| ||||| |||| |||||  || |||||||||||    
T  41015967 ttttttgaattttgaaaaattgattacatagttttcgatgcaaaagttactctatttacttccttaaccagtg 41015895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 49632786 - 49632869
Alignment:
Q  153 agaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||| ||  ||||| |||||||||||||    
T  49632786 agaaattgattacacaattttcgatgtaaaagttactatatttgctttcttaactagtgctccgatgacactggttaacatttc 49632869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 55826376 - 55826279
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||| | ||||||||||||||||| ||||||| ||||  |||| ||||||||||||||| |||||||||| ||||   ||||||||||||||||||    
T  55826376 tttttttatttttgagaaattgattacacaatttccgatacaaaaactactatatttgtttccttaaccagtaccccatggacattggttaacatttc 55826279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 42056269 - 42056340
Alignment:
Q  141 ttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgc 212  Q
    ||||||||||||||||||| |||| ||| ||||||||| |||| ||||||||||||||| ||||||||||||    
T  42056269 ttttgacttttgagaaattaattacacagttttcgatgcaaaaactactatatttgtttccttaaccagtgc 42056340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 38376916 - 38376835
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||| |||||||| |||||| ||||| |||| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||    
T  38376916 gacacttttttgatttttgaaaaattaattacacaattttcgatgcaaaaactaatatatttgtttccttaaccagtgcccc 38376835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 21443959 - 21444034
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    ||||| ||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||| ||||||| ||||||    
T  21443959 ttttttacttttgagaaattgattacacagctttcgatgcaaaagctactatatttgcttttttaaccaatgcccc 21444034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 55762568 - 55762471
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||| | ||||||||||||||||| ||||||| ||||  |||| ||||||||||||||| ||||| |||| | ||   ||||| ||||||||||||    
T  55762568 tttttttatttttgagaaattgattacacaatttccgatacaaaaactactatatttgtttccttaatcagtactccatggacatcggttaacatttc 55762471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 24786315 - 24786390
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||||||||||| | || ||||||| ||||||| | ||  ||||| ||||||||||| || |||||||||||||||    
T  24786315 tttttgacttttaaaaagttgattatacaatttccaatacaaaagttactatatttgcttccttaaccagtgcccc 24786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 24821949 - 24821874
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||||||||||| | || ||||||| ||||||| | ||  ||||| ||||||||||| || |||||||||||||||    
T  24821949 tttttgacttttaaaaagttgattatacaatttccaatacaaaagttactatatttgcttccttaaccagtgcccc 24821874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 37012586 - 37012520
Alignment:
Q  170 ttttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    ||||||||| |||| |||||||||||| || ||||||||||||| | | || | |||||||||||||    
T  37012586 ttttcgatgcaaaaactactatatttgcttccttaaccagtgccacagggataatggttaacatttc 37012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 31862568 - 31862491
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||| |||||||||| ||||   |||||||| ||||||||| ||| ||||| | ||||||||| || |||||||||||    
T  31862568 gacacttttttgactcttgaagcattgattagacaattttcaatgcaaaagtttctatatttgcttccttaaccagtg 31862491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 14941663 - 14941739
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| || |||||||||||    
T  14941663 gacacttttttgacttttga-aaattgattacacaattttcaatgtaaaagctactatatttgcttccttaaccagtg 14941739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 16464173 - 16464097
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||| || |||||||||||||||    
T  16464173 ttttttgacttttgagaaattgattacacaatttccaatacaaaagctactatatttgcttccttaaccagtgcccc 16464097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 28428981 - 28429058
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    |||| |||||||| ||||||||||||||| | ||| ||||||||  |||| |||||||||||| || |||||||||||    
T  28428981 gacacttttttgatttttgagaaattgataacacagttttcgatacaaaaactactatatttgcttccttaaccagtg 28429058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 18711284 - 18711352
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaacc 207  Q
    |||||| |||||||| |||||||||| ||||||||| |  |||||| ||||||||||| || |||||||    
T  18711284 ttttttcacttttgaaaaattgattacacaattttcaaaataaaagttactatatttgcttccttaacc 18711352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 6599448 - 6599486
Alignment:
Q  198 tttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  6599448 tttcttaaccagtgccccggagacattggttaacatttc 6599486  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 29127329 - 29127404
Alignment:
Q  140 tttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||| ||| ||||    
T  29127329 tttttgacttttgagaaattgattacacaatttccgatgcaaaaactactatatttgctttcttaactagtacccc 29127404  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 40236831 - 40236733
Alignment:
Q  138 attttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacatttc 236  Q
    ||||||||||||||||   |||||||| ||||||||| ||| ||||||||||||||||| |  |||||| |||||||| | | ||||||||||||||||    
T  40236831 attttttgacttttgaagtattgattacacaattttcaatgcaaaagctactatatttgctaccttaacgagtgcccccgaggcattggttaacatttc 40236733  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 2736845 - 2736769
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagt 210  Q
    |||| ||||||||||||||| ||||| |||| |||||||| |||| |||| |||||||||||   ||||||||||||    
T  2736845 gacacttttttgacttttgaaaaattaattacacaatttttgatgcaaaaactactatattttccttcttaaccagt 2736769  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 507354 - 507280
Alignment:
Q  141 ttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    ||||||||||||| |||||||||| ||||||| | |  ||||| ||| |||||||| || |||||||||||||||    
T  507354 ttttgacttttgaaaaattgattacacaatttccaagataaaaactattatatttgcttccttaaccagtgcccc 507280  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 30703782 - 30703858
Alignment:
Q  157 attgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacat 233  Q
    |||||||| |||| |||| || ||||   ||||||||||| || ||||||||||||||| | | |||||||||||||    
T  30703782 attgattacacaactttcaatttaaatattactatatttgcttccttaaccagtgccccgggggcattggttaacat 30703858  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 13533979 - 13533883
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacattt 235  Q
    |||||| |||||||| |||||||||| ||||||||| ||  |||||||||||||| || || |||||||||||| || | |||| ||||||||||||    
T  13533979 tttttttacttttgaaaaattgattacacaattttcaatacaaaagctactatatctgcttccttaaccagtgctccggggacactggttaacattt 13533883  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 39097139 - 39097070
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaacca 208  Q
    ||||||||||||| ||||||| |||| ||||||||  ||||||||||||||||||||| || ||||||||    
T  39097139 ttttttgacttttcagaaattaattacacaatttttaatgtaaaagctactatatttgcttccttaacca 39097070  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 47312049 - 47312128
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgccc 214  Q
    |||| |||||| | |||||||||| |||||| ||| ||||||||| |||| ||||||||||||||| ||||||||||||||    
T  47312049 gacactttttttatttttgagaaactgattacacagttttcgatgcaaaa-ctactatatttgtttccttaaccagtgccc 47312128  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 38508286 - 38508357
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagt 210  Q
    ||||||||||||| | ||||||||||  |||||||| || |||||| ||||||||||| || ||||||||||    
T  38508286 ttttttgacttttaaaaaattgattatgcaattttcaatataaaagttactatatttgcttccttaaccagt 38508357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 15351190 - 15351128
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttg 196  Q
    |||| |||||| ||||||||||||||||||| ||| ||||||||| ||||| | |||||||||    
T  15351190 gacactttttttacttttgagaaattgattacacagttttcgatgcaaaagttgctatatttg 15351128  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 36781914 - 36781987
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgc 212  Q
    ||||||| ||||||| || ||||||| ||||||| | ||  |||||||||| ||||||||||||||||| ||||    
T  36781914 ttttttggcttttgaaaagttgattacacaatttccaatacaaaagctactgtatttgttttcttaaccggtgc 36781987  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 19068143 - 19068229
Alignment:
Q  149 tttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacattt 235  Q
    ||||| |||||||||| ||||||||| ||  |||| ||||||||| || || |||||||||||| || | | || ||||||||||||    
T  19068143 tttgaaaaattgattacacaattttcaatacaaaaactactatatatgcttccttaaccagtgctccgggggcactggttaacattt 19068229  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 19116033 - 19116119
Alignment:
Q  149 tttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccctgtgacattggttaacattt 235  Q
    ||||| |||||||||| ||||||||| ||  |||| ||||||||| || || |||||||||||| || | | || ||||||||||||    
T  19116033 tttgaaaaattgattacacaattttcaatacaaaaactactatatatgcttccttaaccagtgctccgggggcactggttaacattt 19116119  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 20560663 - 20560729
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaa 205  Q
    |||||| |||||||| |||||||||| |||||||||  |  ||||| |||||||||||||| |||||    
T  20560663 tttttttacttttgaaaaattgattacacaattttcattacaaaagttactatatttgtttccttaa 20560729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 14258234 - 14258153
Alignment:
Q  134 gacaattttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    |||| |||||| |||||||| ||||| |||| ||| ||||||||  ||||| ||||||||||| ||  ||||||| ||||||    
T  14258234 gacattttttttacttttgaaaaattaattatacagttttcgatacaaaagttactatatttgcttctttaaccaatgcccc 14258153  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4636626 - 4636554
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtg 211  Q
    ||||||||||||||| || ||||||| ||||||||| || ||| | ||| |||||||| ||  ||||||||||    
T  4636626 ttttttgacttttgaaaagttgattacacaattttcaatataagaactattatatttgcttctttaaccagtg 4636554  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 21809760 - 21809684
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgcccc 215  Q
    ||||||||||||||| |||||||||| ||||||||| ||  ||||| |||||||| ||||| ||||||||| |||||    
T  21809760 ttttttgacttttgaaaaattgattacacaattttcaatacaaaagttactatatctgtttccttaaccagcgcccc 21809684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 13665208 - 13665135
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgc 212  Q
    |||||||||  || |||||||||||| |||| || | || |||||||||||||||||  |||||||||||||||    
T  13665208 ttttttgaccgtttagaaattgattatacaacttccaatataaaagctactatatttactttcttaaccagtgc 13665135  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 28414277 - 28414350
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgc 212  Q
    |||||| |||||||||||||| |||| |||||||   ||  ||||| |||||||||||||||||||||||||||    
T  28414277 tttttttacttttgagaaattaattacacaatttcttatacaaaagttactatatttgttttcttaaccagtgc 28414350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 27299760 - 27299816
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatattt 195  Q
    |||||||||||||||||||||||||| ||||||| | ||  ||||||||||||||||    
T  27299760 ttttttgacttttgagaaattgattacacaatttcccatacaaaagctactatattt 27299816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 8008383 - 8008310
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaaccagtgc 212  Q
    ||||||||||||||| || || |||| ||||||||| ||  |||| ||||| ||||| ||||||||||| ||||    
T  8008383 ttttttgacttttgaaaagttaattacacaattttcaatacaaaaactactgtatttattttcttaaccggtgc 8008310  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 39636 - 39705
Alignment:
Q  139 ttttttgacttttgagaaattgattaaacaattttcgatgtaaaagctactatatttgttttcttaacca 208  Q
    ||||||||||||||| ||||| |||  | ||||||| ||| |||| |||||||||||  |||||||||||    
T  39636 ttttttgacttttgaaaaattaattgtataattttcaatgcaaaaactactatatttactttcttaacca 39705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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