View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18278_low_78 (Length: 231)
Name: NF18278_low_78
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_78 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 48158407 - 48158207
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48158407 |
catacactttcaacatgatatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
48158308 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158307 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
48158208 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
|
| |
|
|
| T |
48158207 |
t |
48158207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 5449806 - 5449910
Alignment:
| Q |
105 |
catgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaat--aaaaaaatcatatt |
202 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||||||||| ||| |||||||||||| || | ||||||| | | || |||||||||||||| |
|
|
| T |
5449806 |
catgtgttgtttaaaagagactttt-aatctcgatcatttaattctgatctaagggtcaataaacattcctattattttcacataaaaaaaaatcatatt |
5449904 |
T |
|
| Q |
203 |
agttgt |
208 |
Q |
| |
|
|||||| |
|
|
| T |
5449905 |
agttgt |
5449910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 6231628 - 6231429
Alignment:
| Q |
9 |
catacactttcaacatatatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6231628 |
catacactttcaacatatatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacatg |
6231529 |
T |
|
| Q |
109 |
tgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaa-aaaatcatattagttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6231528 |
tgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataagcacacatattattctaaaataaaaaaaatcatattagttg |
6231429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 5179 - 5380
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5179 |
catacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtagcaaggaacat |
5278 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5279 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaattcatattagttg |
5378 |
T |
|
| Q |
208 |
tt |
209 |
Q |
| |
|
|| |
|
|
| T |
5379 |
tt |
5380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 14834520 - 14834319
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14834520 |
catacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtagcaaggaacat |
14834421 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14834420 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaattcatattagttg |
14834321 |
T |
|
| Q |
208 |
tt |
209 |
Q |
| |
|
|| |
|
|
| T |
14834320 |
tt |
14834319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 52106026 - 52106226
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52106026 |
catacactttcaacatgatatttttgatttagaatctgcacttttgatatgaagaagatgaataatctatacaaacaagatatcatgtagcaaggaacat |
52106125 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52106126 |
atgttgtttaaaagagaatttttaatctcaattatttaattcttatctcagggtcaataagcaccaatattattctaaaataaaaaaatcatattagttg |
52106225 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
|
| |
|
|
| T |
52106226 |
t |
52106226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 39111248 - 39111129
Alignment:
| Q |
86 |
gatatcatgtagcaaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaa |
185 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| |
|
|
| T |
39111248 |
gataccatgtggcaaggaacatgtgttgtttaaaagagactttt-aatctcgatcatttaattctaatctaagggtcaataagcattcctattattct-- |
39111152 |
T |
|
| Q |
186 |
aataaaaaaatcatattagttgt |
208 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39111151 |
cataaaaaaatcatattagttgt |
39111129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 25092099 - 25092067
Alignment:
| Q |
102 |
gaacatgtgttgtttaaaagagggtttttaatc |
134 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
25092099 |
gaacatgtgttgtttaaaagagggcttttaatc |
25092067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 31354 - 31156
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31354 |
catacaatttcaacatgatatttttgttttagaatctgcacttttgatatggataagatgaataattcatacaaacaagatatcatgtagcaaggaacat |
31255 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagtt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31254 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaattcatattagtt |
31156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 6090819 - 6091020
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6090819 |
catacactttcaacatgatattttttatttagaatctgcacttttgatatggagaagatgaataatctatacaaacaagatatcatgtagcaaggaacat |
6090918 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaat-aaaaaaatcatattagtt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
6090919 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataagcacccatattattttaaaataaaaaaaatcatattagtt |
6091018 |
T |
|
| Q |
207 |
gt |
208 |
Q |
| |
|
|| |
|
|
| T |
6091019 |
gt |
6091020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 4566633 - 4566512
Alignment:
| Q |
86 |
gatatcatgtagcaaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaa |
185 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||||||||||| | ||||||| | | |
|
|
| T |
4566633 |
gataccatgtggcaaggaacatgtgttgtttaaaagaga-tttttaatctcgatcatttaattatgatctaagggtcaataagcattcctattattttca |
4566535 |
T |
|
| Q |
186 |
aataaaaaaatcatattagttgt |
208 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4566534 |
cataaaaaaatcatattagttgt |
4566512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 41806923 - 41806723
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41806923 |
catacactttcaacatgatatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagtaaggaacat |
41806824 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41806823 |
gtgttgtttaaaaaaggatttttaatctcaatcatttaattcttatctaagggtcaataaccacccatgttattctaaaataaaaaaatcatattagttg |
41806724 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
|
| |
|
|
| T |
41806723 |
t |
41806723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 26034127 - 26033930
Alignment:
| Q |
9 |
catacactttcaacat-atatttttgatttagaatctgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034127 |
catacactttcaacatgatatttttgatttagaatccgcacttttgatatggagaagatgaataatccatacaaacaagatatcatgtagcaaggaacat |
26034028 |
T |
|
| Q |
108 |
gtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaaaataaaaaaatcatattagttg |
207 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26034027 |
gtat--tttaaaagagggtttttaatctcaatcatttaattcttatctaagggtcaataagcacccatattattctaaaat-aaaaaatcatattagttg |
26033931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 41413734 - 41413613
Alignment:
| Q |
86 |
gatatcatgtagcaaggaacatgtgttgtttaaaagagggtttttaatctcaatcatttaattcttatccaagggtcaataagcacccatattattctaa |
185 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| | ||| ||||||||||||||| | ||||||| | | |
|
|
| T |
41413734 |
gataccatgtggcaaggaacatgtgttgtttaaaagagactttt-aatctcgatcatttaattttgatctaagggtcaataagcattcctattattttca |
41413636 |
T |
|
| Q |
186 |
aataaaaaaatcatattagttgt |
208 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
41413635 |
cattaaaaaatcatattagttgt |
41413613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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