View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_79 (Length: 230)
Name: NF18278_low_79
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 8097859 - 8098045
Alignment:
| Q |
15 |
cacagaccatgagaaataatgccaagttatcttttgttggaagacaattatcgccaaacaaaaagacaccttcatcgaaacagaattactccaaataata |
114 |
Q |
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| T |
8097859 |
cacaaaccatgagaaataatgccaagttatcttttgttggaagacaa--------------aaagacaccttcatcgaaaccgaattactccaaataata |
8097944 |
T |
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| Q |
115 |
ttaagattttgtgggcaatcaagaatagaacctcccctttgagataggagtttgtaagctcatttgtgatttgattgtgtacttgtcattaagttcaatc |
214 |
Q |
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| T |
8097945 |
tcaagattttgtgggcaatcaagaatagaaccttccctttgagataggagtttataagctcatttgtgatttgattgtgtacttgtcattaagttcaatc |
8098044 |
T |
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