View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_80 (Length: 223)

Name: NF18278_low_80
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_80
NF18278_low_80
[»] chr3 (1 HSPs)
chr3 (1-223)||(8522376-8522598)
[»] chr5 (8 HSPs)
chr5 (1-216)||(42117002-42117220)
chr5 (4-216)||(42122756-42122968)
chr5 (17-216)||(34233395-34233594)
chr5 (17-216)||(34241168-34241367)
chr5 (4-184)||(42128151-42128331)
chr5 (1-165)||(41714176-41714340)
chr5 (28-216)||(41618260-41618448)
chr5 (28-216)||(41572621-41572809)
[»] chr4 (1 HSPs)
chr4 (4-216)||(11117413-11117631)
[»] chr2 (4 HSPs)
chr2 (4-213)||(11995006-11995218)
chr2 (4-163)||(12247712-12247871)
chr2 (15-131)||(32682381-32682497)
chr2 (47-165)||(9423388-9423506)
[»] chr6 (1 HSPs)
chr6 (1-216)||(25523636-25523854)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8522376 - 8522598
Alignment:
Q  1 cattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522376 cattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcct 8522475  T
Q  101 attccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||    
T  8522476 attccaatcacaaatccacatccgtatccaattgccactggtttccatccaaattcaaacttctcttcactgcaaaagttgttggctgaaggtgcagaat 8522575  T
Q  201 gttgttcaggtccacacattttt 223  Q
    |||||||||||||||||||||||    
T  8522576 gttgttcaggtccacacattttt 8522598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42117002 - 42117220
Alignment:
Q  1 cattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcct 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  42117002 cattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctttccaattaaaaacataaaatatccaatgcct 42117101  T
Q  101 attccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaa---gttgttggctgaaggtgcag 197  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||   |||||||||||||  || ||    
T  42117102 attccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctcttcactgcaaaagctgttgttggctgaaattggag 42117201  T
Q  198 aatgttgttcaggtccaca 216  Q
    |||| ||||||||||||||    
T  42117202 aatgatgttcaggtccaca 42117220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 42122756 - 42122968
Alignment:
Q  4 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 103  Q
    |||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42122756 tcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcatatt 42122855  T
Q  104 ccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaatgtt 203  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||  ||| |||| ||||||||||||| ||||||||    
T  42122856 ccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttcttggctgaaggtggagaatgtt 42122955  T
Q  204 gttcaggtccaca 216  Q
    |||||||||||||    
T  42122956 gttcaggtccaca 42122968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 34233594 - 34233395
Alignment:
Q  17 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 116  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  34233594 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34233495  T
Q  117 cacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccaca 216  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||||||    
T  34233494 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccaca 34233395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 34241367 - 34241168
Alignment:
Q  17 ttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 116  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  34241367 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34241268  T
Q  117 cacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccaca 216  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||||||    
T  34241267 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccaca 34241168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 42128151 - 42128331
Alignment:
Q  4 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 103  Q
    |||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  42128151 tcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaacatataatatccaatgcctatt 42128250  T
Q  104 ccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttg 184  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||  ||| ||||||||    
T  42128251 ccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttgttg 42128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 41714340 - 41714176
Alignment:
Q  1 cattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcct 100  Q
    ||||||||| || | | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  41714340 cattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggctttccgatcaaaaacatgtaatacccaatgcct 41714241  T
Q  101 attccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctc 165  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  41714240 attccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctc 41714176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 41618448 - 41618260
Alignment:
Q  28 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 127  Q
    |||||| ||||| ||||  ||||| |||||||||||||||||||||||||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
T  41618448 cttaggttgacctccaaccatcatcacaagccatctaggctttccaattaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41618349  T
Q  128 ccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccaca 216  Q
    ||||| |||||||||||||||||||||||||||||||| ||||  |||| |||||||| || | | | |||||||||||||||| ||||    
T  41618348 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcaca 41618260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 41572809 - 41572621
Alignment:
Q  28 cttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 127  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||  |||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
T  41572809 cttaggttgacctccaaccatcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41572710  T
Q  128 ccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaagttgttggctgaaggtgcagaatgttgttcaggtccaca 216  Q
    ||||| |||||||||||||||||||||||||||||||| ||||  |||| |||||||| || | | | |||||||||||||||| ||||    
T  41572709 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcaca 41572621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 11117413 - 11117631
Alignment:
Q  4 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 103  Q
    |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11117413 tcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcttatt 11117512  T
Q  104 ccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctca--cc----gcaaaagttgttggctgaaggtgcag 197  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||  ||    | || |||||||||||||||||| ||    
T  11117513 ccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctcttcattccaagaggaagagttgttggctgaaggtggag 11117612  T
Q  198 aatgttgttcaggtccaca 216  Q
    |||||||||||||||||||    
T  11117613 aatgttgttcaggtccaca 11117631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 11995218 - 11995006
Alignment:
Q  4 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 103  Q
    |||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  11995218 tcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctatt 11995119  T
Q  104 ccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaa---gttgttggctgaaggtgcagaat 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||   ||||   |||||||| |||||||| ||||     
T  11995118 ccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctcttcactcgaaaagctgttgttgggtgaaggtggagaac 11995019  T
Q  201 gttgttcaggtcc 213  Q
    |||||||||||||    
T  11995018 gttgttcaggtcc 11995006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 12247712 - 12247871
Alignment:
Q  4 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctatt 103  Q
    |||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  12247712 tcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctatt 12247811  T
Q  104 ccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttc 163  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  12247812 ccaatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttc 12247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 32682497 - 32682381
Alignment:
Q  15 ttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaa 114  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaa 32682398  T
Q  115 tccacatccgtatccaa 131  Q
    ||||||||| |||||||    
T  32682397 tccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 9423506 - 9423388
Alignment:
Q  47 atcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttcc 146  Q
    ||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||||| ||| | ||||||||| |||||||||||||||| |||||    
T  9423506 atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc 9423407  T
Q  147 atccaaatccaaatttctc 165  Q
    |||||||||||||||||||    
T  9423406 atccaaatccaaatttctc 9423388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 25523854 - 25523636
Alignment:
Q  1 cattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcct 100  Q
    ||||||||||||| |||||||  | |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25523854 cattcttgtcctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttccaactaaaaacatacaatatccaatgcct 25523755  T
Q  101 attccaatcacaaatccacatccgtatccaattgccactggtttccatccaaatccaaatttctcctcaccgcaaaag---ttgttggctgaaggtgcag 197  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||||  ||||||   ||||||| |||||||| ||    
T  25523754 attccaatcagaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctcttcactccaaaagtttttgttgggtgaaggtggag 25523655  T
Q  198 aatgttgttcaggtccaca 216  Q
    ||||||||||| |||||||    
T  25523654 aatgttgttcaagtccaca 25523636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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