View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_84 (Length: 213)
Name: NF18278_low_84
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_84 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 51455664 - 51455841
Alignment:
| Q |
19 |
aagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatagctgttgacttcacactttttg |
118 |
Q |
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| T |
51455664 |
aagatgagcgtgtgttctggtaaagactgatttggtatattaatcaatgcttttttt-acttattctaatgctatatagttgttgacttcacactttttg |
51455762 |
T |
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| Q |
119 |
tagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt |
197 |
Q |
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| T |
51455763 |
tagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt |
51455841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
| Q |
79 |
ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt |
178 |
Q |
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|||| ||||| |||||||| | |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30206922 |
ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt |
30206823 |
T |
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| Q |
179 |
tgacctttgtctcct |
193 |
Q |
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| T |
30206822 |
tgacatttgtctcct |
30206808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
| Q |
79 |
ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt |
178 |
Q |
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| T |
51480424 |
ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt |
51480523 |
T |
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| Q |
179 |
tgacctttgtct |
190 |
Q |
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| T |
51480524 |
taacatttgtct |
51480535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
| Q |
109 |
acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct |
193 |
Q |
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| T |
51497310 |
acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct |
51497394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 43160593 - 43160774
Alignment:
| Q |
19 |
aagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatagc-----tgttgacttcacact |
113 |
Q |
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| T |
43160593 |
aagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg-ttttctttacttat-ctaatgctttatagtgacaatgttggcttcacact |
43160690 |
T |
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| Q |
114 |
ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt |
197 |
Q |
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| T |
43160691 |
ttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaacctttgtctcctctgt |
43160774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
| Q |
114 |
ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt |
197 |
Q |
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| T |
27396465 |
ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt |
27396548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
| Q |
111 |
actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
190 |
Q |
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| T |
20868751 |
actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct |
20868672 |
T |
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Target: scaffold0020 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
| Q |
112 |
ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
190 |
Q |
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| T |
137431 |
ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct |
137353 |
T |
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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
| Q |
109 |
acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct |
190 |
Q |
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| T |
18085553 |
acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct |
18085634 |
T |
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