View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_88 (Length: 203)

Name: NF18278_low_88
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_88
NF18278_low_88
[»] chr7 (5 HSPs)
chr7 (59-187)||(48640227-48640355)
chr7 (63-186)||(11645150-11645273)
chr7 (62-187)||(28170760-28170885)
chr7 (62-186)||(16672416-16672540)
chr7 (62-186)||(17646784-17646908)
[»] chr4 (3 HSPs)
chr4 (69-187)||(12900294-12900412)
chr4 (62-187)||(24050509-24050634)
chr4 (63-187)||(2480578-2480702)
[»] chr6 (2 HSPs)
chr6 (62-187)||(29202322-29202447)
chr6 (69-187)||(8562086-8562204)
[»] chr1 (3 HSPs)
chr1 (69-187)||(11929529-11929647)
chr1 (62-187)||(38684939-38685064)
chr1 (130-187)||(23481305-23481362)
[»] chr3 (3 HSPs)
chr3 (62-187)||(47502204-47502329)
chr3 (62-187)||(17757066-17757191)
chr3 (62-187)||(19058386-19058511)
[»] chr5 (2 HSPs)
chr5 (69-187)||(7780779-7780897)
chr5 (62-172)||(7128139-7128249)
[»] scaffold0013 (1 HSPs)
scaffold0013 (63-187)||(103271-103393)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 3e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 48640227 - 48640355
Alignment:
Q  59 gaccaagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48640227 gaccaagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactaaactatgtatgttatgtacttcaattgaagtttggtgacagtctcatc 48640326  T
Q  159 catcacagtaacaggatgagtcatcaaag 187  Q
    |||||||||||||||||||||||||||||    
T  48640327 catcacagtaacaggatgagtcatcaaag 48640355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 11645150 - 11645273
Alignment:
Q  63 aagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatc 162  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11645150 aagaagttaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgtttggtacttcaattgaagtttggtgacagtctcgtccatc 11645249  T
Q  163 acagtaacaggatgagtcatcaaa 186  Q
     ||||||||||||| |||||||||    
T  11645250 tcagtaacaggatgggtcatcaaa 11645273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 28170885 - 28170760
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  28170885 caagaagttaggatggaaaacgacaaattacatcttctatgtcgtactcaactatgtatgttctgtacttcaattgaagtttggtgacagtctcgtcaat 28170786  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    | || |||||||||||||||||||||    
T  28170785 ctcaataacaggatgagtcatcaaag 28170760  T

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Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 16672540 - 16672416
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||  |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16672540 caagaagttaggaaggaaagcgacaaattacatcttctgtgtcatattcaactatgtatgttctgtacttcaattgaagtttggggacagtctcgtccat 16672441  T
Q  162 cacagtaacaggatgagtcatcaaa 186  Q
    | |||||||||||||||||||||||    
T  16672440 ctcagtaacaggatgagtcatcaaa 16672416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 17646908 - 17646784
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||  |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17646908 caagaagttaggaaggaaagcgacaaattacatcttctgtgtcatattcaactatgtatgttctgtacttcaattgaagtttggggacagtctcgtccat 17646809  T
Q  162 cacagtaacaggatgagtcatcaaa 186  Q
    | |||||||||||||||||||||||    
T  17646808 ctcagtaacaggatgagtcatcaaa 17646784  T

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Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 12900412 - 12900294
Alignment:
Q  69 ttaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatcacagta 168  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  12900412 ttaggaaggaaaacgacaaattacatcttctgtgtcgtactcaactatgtatgttctgtacttcaattgaagtttggtgacagtctcgtccatctcagta 12900313  T
Q  169 acaggatgagtcatcaaag 187  Q
    |||||||||||||||||||    
T  12900312 acaggatgagtcatcaaag 12900294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 24050634 - 24050509
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  24050634 caagaagttaggaaggaaaacgacaaattacatcttctgtgtcgtactcaactatgtatgttttgtacttcaattgaagtttggtgacagtcttgtccat 24050535  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    | ||||||||||||||||||||||||    
T  24050534 ctcagtaacaggatgagtcatcaaag 24050509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 2480578 - 2480702
Alignment:
Q  63 aagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatc 162  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  2480578 aagaagttaggaaggaaaacgacaaattacatcttcagtgtcgtactcaactatgtatgttctgtacttcaattgaagtttggtgacagtctcgtcaatc 2480677  T
Q  163 acagtaacaggatgagtcatcaaag 187  Q
     ||||||||||||||||||||||||    
T  2480678 tcagtaacaggatgagtcatcaaag 2480702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 29202447 - 29202322
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29202447 caagaagttaggaaggaaaatgacaaattacatcttatgtgtcgtactcaactatgtatgttctgtacttcaattgaagtttgttgacagtctcgtccat 29202348  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    | ||||||||||||||||||||||||    
T  29202347 ctcagtaacaggatgagtcatcaaag 29202322  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 8562086 - 8562204
Alignment:
Q  69 ttaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatcacagta 168  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||    
T  8562086 ttaggaaggaaaacgacaaattacatcttatgtgtcgtactcaactatgtatgttctgtacttcaattgaagcttggtgacagtcttgtccatctcagta 8562185  T
Q  169 acaggatgagtcatcaaag 187  Q
    |||||||||||||||||||    
T  8562186 acaggatgagtcatcaaag 8562204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 11929647 - 11929529
Alignment:
Q  69 ttaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatcacagta 168  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  11929647 ttaggaaggaaaacgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagcttggtgacagtcttgtccatctcagta 11929548  T
Q  169 acaggatgagtcatcaaag 187  Q
    ||||||||||||| |||||    
T  11929547 acaggatgagtcaccaaag 11929529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 38685064 - 38684939
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||  | ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  38685064 caagaagttaggaaggatgacgacaaattacatactctgtgtcgtactcaactatgtatgttttgtacttcaattgaagtttggtgacagtctcatccat 38684965  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    | |||||||| ||| |||||||||||    
T  38684964 ctcagtaacatgatcagtcatcaaag 38684939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 23481305 - 23481362
Alignment:
Q  130 ttcaattgaagtttggtgacagtctcgtccatcacagtaacaggatgagtcatcaaag 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||    
T  23481305 ttcaattgaagtttggtgacagtcttgtccatctcagtaacatgatgagccatcaaag 23481362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 47502204 - 47502329
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47502204 caagaagttaggaaggaaaacgacaaattacatcttatgtgtcgtactcaactatgtatgttctgtacttcaattgaagtttggtgacagtctcgtccat 47502303  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    | || |||||||||||||| ||||||    
T  47502304 ctcactaacaggatgagtcgtcaaag 47502329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 17757191 - 17757066
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| | |||||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||    
T  17757191 caagaagtcaggaaggaaaacaacaaattacatcttccgtgtcgtactcaactatgtatgttctgtacttcaattgaagctttgtgacagtcttgtccat 17757092  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    |  |||||||||||||||||||||||    
T  17757091 cttagtaacaggatgagtcatcaaag 17757066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 19058511 - 19058386
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| | |||||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||    
T  19058511 caagaagtcaggaaggaaaacaacaaattacatcttccgtgtcgtactcaactatgtatgttctgtacttcaattgaagctttgtgacagtcttgtccat 19058412  T
Q  162 cacagtaacaggatgagtcatcaaag 187  Q
    |  |||||||||||||||||||||||    
T  19058411 cttagtaacaggatgagtcatcaaag 19058386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 7780897 - 7780779
Alignment:
Q  69 ttaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatcacagta 168  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||    
T  7780897 ttaggaaggaaaacgaaaaattacatcttctgtgtcgtactcaactatgtatgttctgtacttcaattgaagcttggtgacagtcttgtccatctcagta 7780798  T
Q  169 acaggatgagtcatcaaag 187  Q
    |||||||||||||||||||    
T  7780797 acaggatgagtcatcaaag 7780779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 7128249 - 7128139
Alignment:
Q  62 caagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccat 161  Q
    |||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7128249 caagaagttaggaaggaaaatgacaaattacatcttatgtgtcatactcaactatgtatgttctgtacttcaattgaagtttggtgacagtctcgtccat 7128150  T
Q  162 cacagtaacag 172  Q
    | |||||||||    
T  7128149 ctcagtaacag 7128139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 103393 - 103271
Alignment:
Q  63 aagaaattaggaaggaaaatgacaaattacatcttctgtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtccatc 162  Q
    ||||| ||||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  103393 aagaagttaggaaggaaaacgacagattacatctt--gtgtcgtactcaactatgtatgttatgtacttcaattgaagtttggtgacagtctcgtctatc 103296  T
Q  163 acagtaacaggatgagtcatcaaag 187  Q
     |||||| |||||||||||||||||    
T  103295 tcagtaataggatgagtcatcaaag 103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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