View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18279_high_11 (Length: 330)
Name: NF18279_high_11
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_high_11 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 43386668 - 43386354
Alignment:
| Q |
14 |
tatactagttgatggaggggggacatatggactcttgtgtcataattataaactgtatatggtattaatggacgtatatataaatcacaatcatatatgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43386668 |
tatactagttgatggaggggggacat--ggactcttgtgtcataattataaactgtatatggttttaatggacgtatatataaatcacaatcatatatgt |
43386571 |
T |
|
| Q |
114 |
atgtatgcatttattgtgtgcttaattagcaaacaaactaaatggtgtaccattaaataaaccctacttgttgagctagcgtatatatgtgtggtttcca |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43386570 |
atgtatgcatttcttgtgtgcttaattagcaaacaaattaaatggtgtacaattaaataaaccctacttgttgagctagcgtatatatgtgtggtttcca |
43386471 |
T |
|
| Q |
214 |
tttgtttgtcctggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcagttaagacaattaattattctttctctataaacatatatga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43386470 |
tttgtttgtcctggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcggttaagacaattaattattctttctctataaacatatatga |
43386371 |
T |
|
| Q |
314 |
gtgtatgtatatgtaag |
330 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
43386370 |
gtatatgtatatgtaag |
43386354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 50122978 - 50122943
Alignment:
| Q |
175 |
ccctacttgttgagctagcgtatatatgtgtggttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
50122978 |
ccctacttgttgagctagcgtatatatgtgtggttt |
50122943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 206
Target Start/End: Original strand, 31951404 - 31951435
Alignment:
| Q |
175 |
ccctacttgttgagctagcgtatatatgtgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31951404 |
ccctacttgttgagctagcgtatatatgtgtg |
31951435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University