View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18279_high_2 (Length: 494)

Name: NF18279_high_2
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18279_high_2
NF18279_high_2
[»] chr2 (4 HSPs)
chr2 (6-428)||(31680550-31680972)
chr2 (57-409)||(31693259-31693605)
chr2 (61-264)||(31687335-31687538)
chr2 (61-243)||(31703667-31703849)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 31680972 - 31680550
Alignment:
Q  6 aaattgatcgtaatcctaactaactattttagtgaggataagagtaaattgagagtgataccttgagaagtatctcctctggctcggtataaatgagggg 105  Q
    ||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31680972 aaattgatcgttatcctaacaaactatttttgtgagggtaagagtaaattgagagtgataccttgagaagtatctcctctggctcggtataaatgagggg 31680873  T
Q  106 aacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgatgtaagaagcgtcagtagcattactgaggcgaccggaggcgccgtcaccg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  31680872 aacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgatgtaagaagcgtcagtagcattactgagtcgaccggaggcgccgtcgccg 31680773  T
Q  206 ggatggctgacaattccgatgaccgactggtagtagagattagggtccggcgcgggacaagtgaccggtgatgagatacggtggagttgagttgggagaa 305  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31680772 ggatggctgacaattccgatgaccggctggtagtagagattagggtccggcgcgggacaagtgaccggtgatgagatacggtggagttgagttgggagaa 31680673  T
Q  306 ggatttcggagtaggagttggtggagagaaagcaactgaagaagattgtgatgaggaagagaaacgaaacggagtcgtttgacatgatgttggagaagtg 405  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  31680672 ggatttcggagtaggagtcagtggagagaaagcaaccgaagaagattgtgatgaggaatagaaacgaaacggcgtcgtttgacatgatgttggagaagtg 31680573  T
Q  406 aagaaatggaaaagaggatcaac 428  Q
    |||||||||||||||||||||||    
T  31680572 aagaaatggaaaagaggatcaac 31680550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 57 - 409
Target Start/End: Complemental strand, 31693605 - 31693259
Alignment:
Q  57 agagtgataccttgagaagtatctcctctggctcggtataaatgaggggaacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgat 156  Q
    |||| |||||||| ||||||||||||  |||||| ||||| || || |||||||||||||||||  |||| || || |||||||| || || ||||| |     
T  31693605 agagggataccttaagaagtatctcccatggctcagtatagataagtggaacaactctagcaccaccagcctccacaaatttaacgtatgaggcagccaa 31693506  T
Q  157 gtaagaagcgtcagtagcattactgaggcgaccggaggcgccgtcaccgggatggctgacaattccgatgaccgactggtagtagagattagggtccggc 256  Q
    ||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| ||||||||| |||| ||||||||| ||  ||| ||||||     
T  31693505 gtaggaagcgtcagtagcattactgaggcgaccagaggcaccatcaccaggatggctgagaattccgataaccggctggtagtataggctagagtccggt 31693406  T
Q  257 gcgggacaagtgaccggtgatgagatacggtggagttgagttgggagaaggatttcggagtaggagttggtggagagaaagcaactgaagaagattgtga 356  Q
    || |||||| ||||||  |||||||||||| ||||||||||||||||||| ||||   |||  ||||| | | ||| ||||||| ||  |||||||||||    
T  31693405 gcaggacaattgaccgacgatgagatacggcggagttgagttgggagaagaattttcaagtgagagttagagaagaaaaagcaa-tg--gaagattgtga 31693309  T
Q  357 tgaggaagagaaacgaaacggagtcgtttgacatgatgttggagaagtgaaga 409  Q
    | ||||||||| || ||||  ||| | |||||   ||||||||||||||||||    
T  31693308 taaggaagagatacaaaacaaagtggcttgac---atgttggagaagtgaaga 31693259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 31687538 - 31687335
Alignment:
Q  61 tgataccttgagaagtatctcctctggctcggtataaatgaggggaacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgatgtaa 160  Q
    |||||||||| |||| ||||||  |||||| ||||| || || |||||||||||||||||  |||||||||| ||||||||||| |||||||| || ||     
T  31687538 tgataccttgcgaaggatctcccatggctcagtatatataagtggaacaactctagcaccaccagcttcaacaaatttaacatatgaagcagcaatatag 31687439  T
Q  161 gaagcgtcagtagcattactgaggcgaccggaggcgccgtcaccgggatggctgacaattccgatgaccgactggtagtagagattagggtccggcgcgg 260  Q
      |||  |||| ||||||||||| ||||||||||| || || ||||| || ||||||||||| || ||||   ||||||| ||| ||| |||||| || |    
T  31687438 ttagctccagttgcattactgagtcgaccggaggcaccatcgccggggtgactgacaattccaataaccggacggtagtaaagactagcgtccggtgccg 31687339  T
Q  261 gaca 264  Q
    ||||    
T  31687338 gaca 31687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 31703849 - 31703667
Alignment:
Q  61 tgataccttgagaagtatctcctctggctcggtataaatgaggggaacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgatgtaa 160  Q
    ||||||||||||||   ||||||| || ||| | |||||||| ||||| |||||||| || ||||| || |||||||| ||||| || ||    ||| |     
T  31703849 tgataccttgagaatcttctcctccggttcgttgtaaatgagaggaactactctagcgccagcagcctccacgaatttcacataagaggcgtgaatgaag 31703750  T
Q  161 gaagcgtcagtagcattactgaggcgaccggaggcgccgtcaccgggatggctgacaattccgatgaccgactggtagtagag 243  Q
    |||||| | |||||||||||| |||| || || | ||| || ||||| ||||||| |||||| ||||||| ||||||||||||    
T  31703749 gaagcgcccgtagcattactgtggcggcctgaagtgccatcgccggggtggctgagaattccaatgaccggctggtagtagag 31703667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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