View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_high_25 (Length: 219)
Name: NF18279_high_25
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16560013 - 16559810
Alignment:
| Q |
1 |
gcaaagactgtgatagtaagtacgacaatgaagaggg-atgcaattatgttgttctggtgggcagctggtgtacaagacggagagggagtgtggctttgg |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16560013 |
gcaaagactgtgatagtaagtacgacgatgaagaggggatgcaattatgttgttctggtgggcagctggtgtacaagacggagagggagtgtggctttgg |
16559914 |
T |
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| Q |
100 |
agtcgtagtatgtcttgagtgcgacaatagtcacagagcgaatgtaacgacaaagaggctatgcaaatatggtgttcttgcatgcgccgagtgaatgaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16559913 |
agtcgtagtatgtcttgagtgcgacaatagtcacagagcaaatgcaacgacaaagaggctatgcaaatatggtgttcttgcatgcgccgagtgaatgaga |
16559814 |
T |
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| Q |
200 |
ggac |
203 |
Q |
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|||| |
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| T |
16559813 |
ggac |
16559810 |
T |
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