View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18279_high_4 (Length: 443)
Name: NF18279_high_4
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 31200064 - 31200485
Alignment:
| Q |
11 |
atgaaaatgattccattatgatgagagaaatgaaacttttgagtttaactttcttttatggataacaaaatggtcgaaatacaactataagaaaagactg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200064 |
atgaaaatgattccattatgatgagagaaatgaaacttttgagtttaactttcttttatggataacaaaatggtcgaaatacaactataagaaaagactg |
31200163 |
T |
|
| Q |
111 |
aagcttaatcaagcatggagtacaactagcaactccatcctataaaaacgg---tataaagtgatttgattgtacgtgtgtttaaacaacnnnnnnnnnt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
31200164 |
aagcttaatcaagcatggagtacaactagcaactccatcctataaaaacggcactataaagtgatttgattgtacgcgtgtttaaacaaaaaaaaaatat |
31200263 |
T |
|
| Q |
208 |
tacattttcggtgcatataa---actaaatctttatttatctcgattacgatggaccacatggcacaggctacattttgtagcttctagaaattagagta |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200264 |
tacattttcggtgcatataataaactaaatctttatttatctcgattatgatggaccacatggcacaggctacattttgtagcttctagaaattagagta |
31200363 |
T |
|
| Q |
305 |
agagagctctaaatttaaggttgtgctctgaaccaaacacaagcataaaaaaggagcttgagcatgaacctgcagtcacactccagaaattgtgtttcca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200364 |
agagagctctaaatttaaggttgtgctctgaaccaaacacaagcataaaaaaggagcttgagcatgaacctgcagtcacactccagaaattgtgtttcca |
31200463 |
T |
|
| Q |
405 |
taaaatcgcatttttgaagaaa |
426 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31200464 |
taaaatcgcatttttgaagaaa |
31200485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University