View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_high_6 (Length: 419)
Name: NF18279_high_6
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 36408462 - 36408863
Alignment:
| Q |
1 |
aaatgtaaattgatattttcactctgtgcctttttaagtttgtttaaagtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagta |
100 |
Q |
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| T |
36408462 |
aaatgtaaattgatattttcacactgtgcctttttaagtttgtttaaagtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagta |
36408561 |
T |
|
| Q |
101 |
tgttttctatacttcccgtgtttgtttaacttatatctgtttctcattctatcagaagnnnnnnncttatctgtttttcaataatatcaatattatgatc |
200 |
Q |
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| T |
36408562 |
tgttttctatacttcctgtgtttgtttaacttatatctgtttctcattctatcagaagaaaaaaacttatctgtttttcaataatatcaatattatgatc |
36408661 |
T |
|
| Q |
201 |
acactaccattgtaatgaaatctgattccttcattcacaataagtttgacatgttcttacatagctaagttggtaatatactatgctacgtgtttaa-tt |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36408662 |
acactaccattgtaatgaaatatgattccttcattcacaataagtttgacatgttcttacatagctaagttggtaatatactatgctacgtgtttaattt |
36408761 |
T |
|
| Q |
300 |
tgagtggaaccnnnnnnnnattgggccatgatagtgaaattaaaactttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatca |
399 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36408762 |
tgagtggaaccttttttttattgggccatgatagtgaaattaaaactttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatca |
36408861 |
T |
|
| Q |
400 |
at |
401 |
Q |
| |
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|| |
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| T |
36408862 |
at |
36408863 |
T |
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