View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18279_low_1 (Length: 669)

Name: NF18279_low_1
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18279_low_1
NF18279_low_1
[»] chr5 (11 HSPs)
chr5 (48-369)||(32511527-32511849)
chr5 (400-662)||(32511898-32512160)
chr5 (427-661)||(32545220-32545454)
chr5 (47-336)||(32545573-32545860)
chr5 (427-661)||(32570235-32570472)
chr5 (427-570)||(32524436-32524579)
chr5 (428-652)||(32613165-32613392)
chr5 (501-568)||(32530893-32530960)
chr5 (428-570)||(32644456-32644593)
chr5 (136-233)||(32644183-32644280)
chr5 (210-335)||(32570561-32570686)
[»] chr3 (1 HSPs)
chr3 (528-591)||(28855529-28855592)
[»] chr4 (1 HSPs)
chr4 (554-606)||(9552234-9552286)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 48 - 369
Target Start/End: Original strand, 32511527 - 32511849
Alignment:
Q  48 attatacaattcaaatgaatatatgaaaaa-atgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32511527 attatacaattcaaatgaatatatgaaaaagatgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa 32511626  T
Q  147 tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatggaaacagtttctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||    
T  32511627 tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgatccaatttcttgtcctcatcagcattatgaaaacagtttctc 32511726  T
Q  247 tgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgttgcattaccaactatccaaaggcaatatctgcaacaaataaaat 346  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  32511727 tgcttagcatccataacaacttttctccacacagagttactattaatcaaagttgttgcatttccaactatccaaaggcaatatctgcaacaaatataat 32511826  T
Q  347 cagtttaaatcaacatgtgtgca 369  Q
    |||||||||||||||||||||||    
T  32511827 cagtttaaatcaacatgtgtgca 32511849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 400 - 662
Target Start/End: Original strand, 32511898 - 32512160
Alignment:
Q  400 taataattgaaagcaacaaaataatagcatacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatt 499  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32511898 taatacttgaaagcaacaaaataatagcatacctagccctagtgattgcaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatt 32511997  T
Q  500 tgatctaacagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaaccatgtac 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32511998 tgatctaacagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggagccgaaaccatgtac 32512097  T
Q  600 tgcttcactctctcttggatttcatgaacttgcgccttgtatggagatatgatccctatgcta 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32512098 tgcttcactctctcttggatttcatgaacttgcgccttgtatggagatatgatccctatgcta 32512160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 427 - 661
Target Start/End: Complemental strand, 32545454 - 32545220
Alignment:
Q  427 catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag 526  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||| |||||||     
T  32545454 catacctagccctagtgattgcaacatttgctctttgtctattggaaagaaaaccaacttttccactcagatttgatctaacagtagatatgattatgat 32545355  T
Q  527 gtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaaccatgtactgcttcactctctcttggatttcatga 626  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||  || ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32545354 gtcttcttcgccaccttgaaaaccatcaacagaacgaacactaacagaaaagttaggatccgaaaccatgtactgcttcactttctcttggatttcatga 32545255  T
Q  627 acttgcgccttgtatggagatatgatccctatgct 661  Q
    ||||| |||||||| ||||||||||| ||||||||    
T  32545254 acttgtgccttgtaaggagatatgattcctatgct 32545220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 32545860 - 32545573
Alignment:
Q  47 cattatacaattcaaatgaatatatgaaaaaatgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa 146  Q
    |||||||||||| | ||||||||||||||| |||||| ||||||  ||||||||||||  | |  ||||||||| |||||||||||||||||||||||||    
T  32545860 cattatacaattaacatgaatatatgaaaagatgtgacggcttc--ttacctagagaaagtagatgtttctgacatgtcccttatgcttagtttattaaa 32545763  T
Q  147 tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatggaaacagtttctc 246  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||| | |||     
T  32545762 tgctgatgcagattcatctagtagttcaaattcaaagcatgcatcctcaataacttgatccaatttcttgtcctcatcagtattatggaaacaatctctt 32545663  T
Q  247 tgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgttgcattaccaactatccaaaggcaatatctgcaa 336  Q
    | ||| ||||| |||||||| |||||||||||||| |||| |||||  || ||||| ||||| || || |||||||||||||||||||||    
T  32545662 tccttggcatcaacaacaacctttctccacacagaattactattaactaaggttgtagcatttcctacaatccaaaggcaatatctgcaa 32545573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 427 - 661
Target Start/End: Complemental strand, 32570472 - 32570235
Alignment:
Q  427 catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag 526  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||||||| || ||||||||||    ||||||||| ||||| ||||||||||| |     
T  32570472 catacctagccctagtgattgccacattaactctttgtctattggaaagaaaccccacttttccactctcatttgatcttacagttgatattattattat 32570373  T
Q  527 gtcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaacc---atgtactgcttcactctctcttggatttca 623  Q
     ||||| |||||||||||||||||||||||||| |||||| |||  |||||||  | ||| ||||||   ||||||||||| ||| ||||||| ||||||    
T  32570372 atcttcctcgccgccttgaaaaccatcaacagaccggacactaacagagaagtcggtatcagaaaccgcaatgtactgcttaactttctcttgaatttca 32570273  T
Q  624 tgaacttgcgccttgtatggagatatgatccctatgct 661  Q
      |||||| || || |||||||||||||| ||||||||    
T  32570272 aaaacttgagcattatatggagatatgatgcctatgct 32570235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 427 - 570
Target Start/End: Original strand, 32524436 - 32524579
Alignment:
Q  427 catacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgag 526  Q
    |||||||||||||||| || |  ||||| | |||||||||||| |||||||||||||| || ||||    ||||||||| ||||||||||||||||| |     
T  32524436 catacctagccctagtcatagccacatttgctctttgtctatttgaaagaaaaccaacattaccacttccatttgatctcacagtagatattattataat 32524535  T
Q  527 gtcttcttcgccgccttgaaaaccatcaacagaacggacattaa 570  Q
     ||||| || |||||||| ||||| ||||||||||| |||||||    
T  32524536 atcttcctcaccgccttggaaaccgtcaacagaacgaacattaa 32524579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 428 - 652
Target Start/End: Original strand, 32613165 - 32613392
Alignment:
Q  428 atacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgagg 527  Q
    |||||||||||| || || | |||||||| |||||||||||| ||||||||||| || || ||||    ||||||||| ||||||||||||||||| |      
T  32613165 atacctagcccttgtcatcgcaacattagctctttgtctatttgaaagaaaaccgacattaccactcccatttgatctcacagtagatattattataata 32613264  T
Q  528 tcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaac---catgtactgcttcactctctcttggatttcat 624  Q
    || || ||||| ||||| || ||||||| |||||| ||| | |  || ||||  | ||| |||||     |||||||||| ||| |||||||||||||||    
T  32613265 tcctcctcgccaccttggaatccatcaatagaacgaacacttacagaaaagtctgtatcagaaactgaagtgtactgcttaactttctcttggatttcat 32613364  T
Q  625 gaacttgcgccttgtatggagatatgat 652  Q
     |||||| || || ||||||||||||||    
T  32613365 aaacttgagcattatatggagatatgat 32613392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 501 - 568
Target Start/End: Original strand, 32530893 - 32530960
Alignment:
Q  501 gatctaacagtagatattattatgaggtcttcttcgccgccttgaaaaccatcaacagaacggacatt 568  Q
    ||||| ||||||||||||||||| | |||||| || || ||||||||||||||||||||||| |||||    
T  32530893 gatctcacagtagatattattataatgtcttcctcaccaccttgaaaaccatcaacagaacgaacatt 32530960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 570
Target Start/End: Original strand, 32644456 - 32644593
Alignment:
Q  428 atacctagccctagtgattgaaacattagttctttgtctattggaaagaaaaccaacttttccaccaaaatttgatctaacagtagatattattatgagg 527  Q
    |||||||||||| || |||| |||||||| |||||||||||| |||||||||||||| || ||||     ||  |||| || |||||||||||||| |      
T  32644456 atacctagcccttgtcattgcaacattagctctttgtctatttgaaagaaaaccaacattaccac-----ttccatctcacggtagatattattataata 32644550  T
Q  528 tcttcttcgccgccttgaaaaccatcaacagaacggacattaa 570  Q
    ||||| || |  ||||| ||||| ||||||||||| |||||||    
T  32644551 tcttcctcacgaccttggaaaccgtcaacagaacgaacattaa 32644593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 32644183 - 32644280
Alignment:
Q  136 agtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatg 233  Q
    ||||| ||||||| ||| |||||||| || || ||||||| ||||||  |  |||| ||||||||| ||  ||||||||||||||| |||||||||||    
T  32644183 agtttcttaaatggtgactcagattcttcaagaagttcaatctcaaacaagacatcatcaataactcgagccagtttcttgtcctcatcagcattatg 32644280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 32570686 - 32570561
Alignment:
Q  210 tttcttgtcctcttcagcattatggaaacagtttctctgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgttgcatta 309  Q
    |||||||| |||| |||||||||||||||| | |||   ||||||||| | ||| || |||||||| || |||| ||  || || | ||| | ||||||     
T  32570686 tttcttgttctctgcagcattatggaaacaatctcttctcttagcatcaagaactacatttctccaaaccgagtcactgttgattagagtagctgcattt 32570587  T
Q  310 ccaactatccaaaggcaatatctgca 335  Q
    || | |||||||||||||||||||||    
T  32570586 cctaatatccaaaggcaatatctgca 32570561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 591
Target Start/End: Original strand, 28855529 - 28855592
Alignment:
Q  528 tcttcttcgccgccttgaaaaccatcaacagaacggacattaatcgagaagttaggatccgaaa 591  Q
    |||||||| ||||||||||| ||||| |||||||| ||| |||  |||||||||||||| ||||    
T  28855529 tcttcttcaccgccttgaaagccatcgacagaacgaacactaacagagaagttaggatcagaaa 28855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 606
Target Start/End: Complemental strand, 9552286 - 9552234
Alignment:
Q  554 aacagaacggacattaatcgagaagttaggatccgaaaccatgtactgcttca 606  Q
    |||| |||||||| |||  || ||||||||||| |||||||||||||||||||    
T  9552286 aacaaaacggacactaacagaaaagttaggatctgaaaccatgtactgcttca 9552234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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