View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_10 (Length: 364)
Name: NF18279_low_10
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 76685 - 76340
Alignment:
| Q |
1 |
caccccttgcatctcaggagttgactaaagatttaggtggtaatgacacagaatacaaaggtggcnnnnnnncattcacaaatttcataatactttctgt |
100 |
Q |
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| T |
76685 |
caccccttgcatctcaggagttgactaaagatttaggtggtaatgacacagaatacaaaggtggctttttttcattcacaaatttcataatactttctgt |
76586 |
T |
|
| Q |
101 |
tttattcccgactttatgtgattcatattttccatgttgtgttgaaatttttctatatttatgacaaggaatatgatcctctataggactctaaaatttt |
200 |
Q |
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| T |
76585 |
tttattcccgactttatgtgattcatattttccatgttgtgttgaaatttttctatatttatgacaaggaatatgatcctctataggactctaaaatttt |
76486 |
T |
|
| Q |
201 |
gaagttgcagaatgcaatttaaaatcttgatctatattgtaaaatataactgtggtgtaaaaggatagtcttgtcgcaattattagatttggattctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76485 |
gaagttgcagaatgcaatttaaaatcttgatctatattgtaaaatataaccgtggtgtaaaaggatagtcttgtcgcaattattagatttggattctttg |
76386 |
T |
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| Q |
301 |
cagcaactacaccatgcagctcagtacagagccatcacatctgtgt |
346 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
76385 |
cagcaactacaccatgcagctcagtgcagagccatcacatctgtgt |
76340 |
T |
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