View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_11 (Length: 363)
Name: NF18279_low_11
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 3216325 - 3216661
Alignment:
| Q |
12 |
aggatcacagaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgat |
111 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216325 |
aggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgat |
3216424 |
T |
|
| Q |
112 |
tctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggtgcatcattag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3216425 |
tctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggtgcttcattag |
3216524 |
T |
|
| Q |
212 |
acgttgtaccataatcaggaccaaaatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216525 |
acgttgtaccataatcaggaccaaaatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaa |
3216624 |
T |
|
| Q |
312 |
gaaagggttggtgggtccgttaagggagattgaaagt |
348 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3216625 |
gaaagggttggtgggtccgttaagggagattgaaagt |
3216661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 3208386 - 3208691
Alignment:
| Q |
12 |
aggatcacagaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgat |
111 |
Q |
| |
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|||| |||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||| || |||||| |
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| T |
3208386 |
aggaccacaaaaggcaatggaatcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgat |
3208485 |
T |
|
| Q |
112 |
tctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggtgcatcattag |
211 |
Q |
| |
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||||||| ||||| | ||||| |||||| ||||||| ||| || |||||||| || ||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
3208486 |
tctccaagatattctgtcccgtcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattag |
3208585 |
T |
|
| Q |
212 |
acgttgtaccataatcaggaccaaaatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaa |
311 |
Q |
| |
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|| ||||||||| |||||| ||||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
3208586 |
acaaagtaccataaaaaggacctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaa |
3208685 |
T |
|
| Q |
312 |
gaaagg |
317 |
Q |
| |
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|||||| |
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| T |
3208686 |
gaaagg |
3208691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 3202412 - 3202716
Alignment:
| Q |
12 |
aggatcacagaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgat |
111 |
Q |
| |
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||||| ||| ||||||||| ||| ||||||| | |||| | ||||||||||||||||||||| | |||||||||||| ||||||||||| || |||||| |
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| T |
3202412 |
aggattacaaaaggcaatgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaactgat |
3202511 |
T |
|
| Q |
112 |
tctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggtgcatcattag |
211 |
Q |
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||||| | ||||| ||| | ||||| ||||||| ||| ||||||||||| || ||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
3202512 |
tctccgagatattccgtcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattag |
3202611 |
T |
|
| Q |
212 |
acgttgtaccataatcaggaccaaaatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaa |
311 |
Q |
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| |||||||| | |||||| |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
3202612 |
ccaatgtaccatgaaaaggacctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaa |
3202711 |
T |
|
| Q |
312 |
gaaag |
316 |
Q |
| |
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||||| |
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|
| T |
3202712 |
gaaag |
3202716 |
T |
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