View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_13 (Length: 308)
Name: NF18279_low_13
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 7308725 - 7308802
Alignment:
| Q |
20 |
caacgacatccttcgccagttgtttctctttatctacttcatcaatattgtccatctgaaccaactcattcattgtca |
97 |
Q |
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| T |
7308725 |
caactacatccttcgccagttgtttctctttatctacttcatcaacattgtccatctgaaccaactcattcattgtca |
7308802 |
T |
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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 7308914 - 7308986
Alignment:
| Q |
221 |
gttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagccattaaatgttccatgacctttgc |
293 |
Q |
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| T |
7308914 |
gttcttgaggaatgaccgggttatttacaatatgctgtgatttgaaagccattaaatgttccatggcctttgc |
7308986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 6828872 - 6828824
Alignment:
| Q |
221 |
gttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagc |
269 |
Q |
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| T |
6828872 |
gttcttgaggcacgaccgggttatttataagatgctgtgatttgaaagc |
6828824 |
T |
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