View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18279_low_15 (Length: 302)

Name: NF18279_low_15
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18279_low_15
NF18279_low_15
[»] chr4 (12 HSPs)
chr4 (1-287)||(6132556-6132863)
chr4 (1-133)||(2891174-2891306)
chr4 (40-198)||(27498963-27499108)
chr4 (1-196)||(38270329-38270543)
chr4 (1-72)||(3937551-3937622)
chr4 (130-198)||(47564496-47564564)
chr4 (108-169)||(3937678-3937739)
chr4 (4-73)||(18409691-18409760)
chr4 (160-196)||(2891134-2891170)
chr4 (4-64)||(31983877-31983937)
chr4 (154-196)||(18537987-18538029)
chr4 (157-198)||(18535298-18535339)
[»] chr7 (15 HSPs)
chr7 (1-201)||(24748341-24748541)
chr7 (60-196)||(21677796-21677932)
chr7 (1-196)||(39146330-39146524)
chr7 (57-194)||(21679759-21679896)
chr7 (1-73)||(27832977-27833049)
chr7 (2-73)||(22828977-22829048)
chr7 (1-72)||(44724454-44724525)
chr7 (5-70)||(21679904-21679969)
chr7 (128-197)||(27833125-27833194)
chr7 (127-197)||(44724329-44724399)
chr7 (2-71)||(20091885-20091954)
chr7 (1-44)||(25276044-25276087)
chr7 (130-196)||(22829105-22829171)
chr7 (1-61)||(21677952-21678012)
chr7 (164-201)||(11355005-11355042)
[»] chr6 (26 HSPs)
chr6 (1-196)||(22490415-22490610)
chr6 (1-194)||(10583884-10584097)
chr6 (108-196)||(13056949-13057037)
chr6 (108-196)||(3632406-3632494)
chr6 (1-73)||(24338791-24338863)
chr6 (60-135)||(24338871-24338946)
chr6 (109-196)||(24338941-24339028)
chr6 (128-198)||(3630354-3630424)
chr6 (108-196)||(13039509-13039597)
chr6 (1-69)||(13039657-13039725)
chr6 (1-73)||(13870764-13870836)
chr6 (1-73)||(25477173-25477245)
chr6 (1-72)||(3630207-3630278)
chr6 (1-72)||(3632281-3632352)
chr6 (1-70)||(20220030-20220099)
chr6 (1-70)||(22114014-22114083)
chr6 (105-197)||(13870818-13870910)
chr6 (1-64)||(12161897-12161960)
chr6 (1-69)||(13057097-13057165)
chr6 (6-76)||(25466517-25466587)
chr6 (155-199)||(26944923-26944967)
chr6 (16-73)||(3028209-3028266)
chr6 (1-78)||(14466228-14466304)
chr6 (160-196)||(12162024-12162060)
chr6 (60-102)||(12161977-12162019)
chr6 (119-169)||(20219939-20219989)
[»] chr1 (21 HSPs)
chr1 (60-197)||(50248997-50249134)
chr1 (1-77)||(31489775-31489851)
chr1 (1-73)||(18839451-18839523)
chr1 (109-196)||(17323785-17323872)
chr1 (130-195)||(25251749-25251814)
chr1 (113-209)||(17186605-17186701)
chr1 (130-198)||(25248988-25249056)
chr1 (1-73)||(50248917-50248989)
chr1 (1-71)||(25251620-25251690)
chr1 (130-199)||(31489724-31489793)
chr1 (1-73)||(17323929-17324001)
chr1 (60-199)||(18839306-18839443)
chr1 (1-70)||(17186473-17186542)
chr1 (1-73)||(25248859-25248931)
chr1 (4-66)||(43104030-43104092)
chr1 (164-198)||(31423403-31423437)
chr1 (155-204)||(15669891-15669940)
chr1 (155-196)||(18801068-18801109)
chr1 (162-198)||(16430821-16430857)
chr1 (164-196)||(17352797-17352829)
chr1 (164-204)||(50308045-50308085)
[»] chr3 (29 HSPs)
chr3 (1-199)||(36011524-36011743)
chr3 (60-194)||(1627104-1627238)
chr3 (60-197)||(5927188-5927325)
chr3 (1-196)||(43423804-43424000)
chr3 (1-73)||(28137636-28137708)
chr3 (63-196)||(53468879-53469002)
chr3 (108-194)||(28102471-28102558)
chr3 (2-71)||(28100383-28100452)
chr3 (1-73)||(4663763-4663835)
chr3 (120-196)||(7754063-7754139)
chr3 (2-70)||(28102344-28102412)
chr3 (130-198)||(28137765-28137833)
chr3 (128-198)||(28100530-28100600)
chr3 (1-61)||(1627024-1627084)
chr3 (1-73)||(53468796-53468868)
chr3 (1-72)||(43421756-43421826)
chr3 (108-199)||(43421883-43421974)
chr3 (110-196)||(8183163-8183249)
chr3 (4-66)||(1673826-1673888)
chr3 (2-73)||(562104-562174)
chr3 (155-198)||(25635120-25635163)
chr3 (155-197)||(562207-562249)
chr3 (64-114)||(7754137-7754187)
chr3 (52-86)||(54884000-54884034)
chr3 (155-196)||(13420686-13420727)
chr3 (1-50)||(28180891-28180940)
chr3 (2-66)||(23633311-23633375)
chr3 (155-196)||(25633231-25633272)
chr3 (162-198)||(23636725-23636761)
[»] chr2 (13 HSPs)
chr2 (60-196)||(14836971-14837106)
chr2 (1-194)||(34979922-34980136)
chr2 (1-86)||(11739903-11739988)
chr2 (108-199)||(15539947-15540038)
chr2 (1-73)||(15539818-15539890)
chr2 (127-196)||(11740009-11740078)
chr2 (1-86)||(38019970-38020055)
chr2 (130-196)||(22163419-22163485)
chr2 (118-196)||(3021839-3021917)
chr2 (1-70)||(3022006-3022075)
chr2 (1-69)||(22163290-22163358)
chr2 (165-196)||(38019884-38019915)
chr2 (1-66)||(14837121-14837185)
[»] chr5 (15 HSPs)
chr5 (60-196)||(24126579-24126712)
chr5 (60-193)||(2723698-2723823)
chr5 (60-169)||(10474746-10474856)
chr5 (60-179)||(17072619-17072739)
chr5 (1-73)||(10474666-10474738)
chr5 (1-72)||(39398335-39398405)
chr5 (130-196)||(695631-695697)
chr5 (1-73)||(17072747-17072819)
chr5 (1-73)||(24126720-24126792)
chr5 (11-71)||(2723833-2723893)
chr5 (1-198)||(20044755-20044946)
chr5 (108-196)||(20042770-20042858)
chr5 (1-73)||(20042914-20042986)
chr5 (4-73)||(34531011-34531080)
chr5 (1-69)||(695758-695825)
[»] chr8 (11 HSPs)
chr8 (2-196)||(15186054-15186247)
chr8 (60-199)||(27107320-27107458)
chr8 (60-196)||(26774978-26775114)
chr8 (1-69)||(33541731-33541799)
chr8 (1-69)||(27107240-27107308)
chr8 (130-197)||(33541860-33541927)
chr8 (1-73)||(14477196-14477268)
chr8 (1-73)||(25952441-25952513)
chr8 (11-45)||(15949338-15949372)
chr8 (28-73)||(26775122-26775167)
chr8 (1-49)||(5372520-5372568)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6132863 - 6132556
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc---------------------gatttttg 79  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||                     ||||||||    
T  6132863 aataaaactagaacaaatctaggcatgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccaaatgctccaaatcggccaccgatttttg 6132764  T
Q  80 ccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaatttt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6132763 ccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtaccctgaaaatcagccaccgattttcagcttccagaattccaatttcttcaatttt 6132664  T
Q  180 gaggcactttcacaacaattataaagaaaaccttccttnnnnnnnngtacaaagaaaacttgcatttcaaaccgtggcattaattgtaccatcgtcaatt 279  Q
    ||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6132663 gaggcactttcacaacaattataaagaaagccttccttaaaaaaaagtacaaagaaaacttgcatttcaaaccgtggcattaattgtaccattgtcaatt 6132564  T
Q  280 acaaatac 287  Q
    ||||||||    
T  6132563 acaaatac 6132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2891306 - 2891174
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataa 100  Q
    ||||||||| |||||||||||| |||  |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2891306 aataaaactggaacaaatctagtcccataaatacgtttctgttttattttctgctgtcaaaatcggccaccgatttttgccgaacctgaagctcaaataa 2891207  T
Q  101 aacatgtcaaaatcggtcaccgtgccttgaaaa 133  Q
    || | ||||||||||| ||||||||| ||||||    
T  2891206 aataggtcaaaatcggccaccgtgccctgaaaa 2891174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 27499108 - 27498963
Alignment:
Q  40 tgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagcc 139  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||| ||||||          
T  27499108 tgttttattttctgctgtcaaaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccctgccctgaaaa------ 27499015  T
Q  140 accaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
           |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27499014 -------ttcagcttccagaattccaatttcttcaattttgaggcactttcacaacaat 27498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 38270329 - 38270543
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga---------------------tttttg 79  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||                     ||||||    
T  38270329 aataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccgaatgctctaaatcggccatcgatttttg 38270428  T
Q  80 ccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaatttt 179  Q
    ||||||| || || |||| ||||||   |||||||||  | ||||| ||||||||| |||||| |||||| |||  ||||||| ||||||||||||||||    
T  38270429 ccgaaccaaaggc-caaa-aaaacagtccaaaatcggctatcgtgctttgaaaatcggccaccgattttctgctaccagaatttcaatttcttcaatttt 38270526  T
Q  180 gaggcactttcacaaca 196  Q
    |||||||||||||||||    
T  38270527 gaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3937551 - 3937622
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  3937551 aataaaactggaaaaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccaccg 3937622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 47564564 - 47564496
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47564564 aaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaat 47564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 3937678 - 3937739
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 169  Q
    ||||||||| ||||| ||| |||||||| |||||| |||||| |||||||||||||||||||    
T  3937678 caaaatcggccaccgagccctgaaaatcggccaccgattttctgctttcagaattccaattt 3937739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 18409691 - 18409760
Alignment:
Q  4 aaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    |||||| ||||||||||||||||||||||| || | ||||||||||| | |||||||| | |||||||||    
T  18409691 aaaactggaacaaatctaggcccgaaaatatgtgtctgttttattttctactgtcaaatttggccaccga 18409760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 2891170 - 2891134
Alignment:
Q  160 attccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  2891170 attccaatttcttcaattttgaggcactttcacaaca 2891134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 31983877 - 31983937
Alignment:
Q  4 aaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatc 64  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||| ||||| |||||||    
T  31983877 aaaactggaacaaatctaagcccaaaaatatgtttatgttttattttctgctggcaaaatc 31983937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 18537987 - 18538029
Alignment:
Q  154 ttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  18537987 ttcagaacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 18535298 - 18535339
Alignment:
Q  157 agaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  18535298 agaactccaatttcttcaatattgagtcactttcacaacaat 18535339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 24748541 - 24748341
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataa 100  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  24748541 aataaaactggaacaaatctagggccgaaaatacgtttctgttttattttctgctgtcaaaattggccaccgatctttgccgaacctgaagctcaaataa 24748442  T
Q  101 aacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatta 200  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||| ||||||||||||| |||    
T  24748441 aacaggtcaaaatcggtcaccgtgccctgaaaatcagccaccgattttcagcttccagaattctaattttttcaattttgagtcactttcacaacattta 24748342  T
Q  201 t 201  Q
    |    
T  24748341 t 24748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 21677932 - 21677796
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| || |||||| | ||| ||||| |||||||| |||||| ||||||||||| |||     
T  21677932 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggttaaaatcagccactgtgccctgaaaatcggccaccgattttcagcttccagg 21677833  T
Q  160 attccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  21677832 attccaatttcttcaattttgaggcactttcacaaca 21677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 39146330 - 39146524
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataa 100  Q
    ||||||| | ||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||| | ||   ||| |     
T  39146330 aataaaattggaacaaatctaggtctgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccgttttttgccaaaccaacagacaaaaaac 39146429  T
Q  101 aacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||| ||||||||||| |||||  || ||||||||  |||||  ||||| |||| || |||||||||||||||||||||||| |||||||||||||    
T  39146430 aaca-gtcaaaatcggccaccgaaccctgaaaatcgaccaccggttttctgcttccaaaattccaatttcttcaattttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 21679896 - 21679759
Alignment:
Q  57 tcaaaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttc 156  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| |||| |||| |  ||||| |||||| || |||||||| |    
T  21679896 tcaaaatcggccaccaattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccatgccctacaaatcggccaccgatgttcagcttcc 21679797  T
Q  157 agaattccaatttcttcaattttgaggcactttcacaa 194  Q
    |||||||||||||||| | |||||||||||||||||||    
T  21679796 agaattccaatttcttaatttttgaggcactttcacaa 21679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27832977 - 27833049
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||    
T  27832977 aataaaactggaacaaatctaggcccgaaaatacatttctgttttattttctgctgtcaaaattggccaccga 27833049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 22828977 - 22829048
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||    
T  22828977 ataaaactggaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgttaaaatcggccaccga 22829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44724525 - 44724454
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||| |||||||    
T  44724525 aataaaactagaacaaatctaggtccgaaaatacgtttctgttttattttctgctatcaaaatcagccaccg 44724454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 21679969 - 21679904
Alignment:
Q  5 aaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  21679969 aaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggccac 21679904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 27833125 - 27833194
Alignment:
Q  128 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    |||||||| |||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  27833125 tgaaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaa 27833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 44724399 - 44724329
Alignment:
Q  127 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||    
T  44724399 ttgaaaatcggccaccgattttcagcttccagaatttcaattttttcaattttgaggcacgttcacaacaa 44724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 20091885 - 20091954
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc 71  Q
    |||||| | ||||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||    
T  20091885 ataaaattggaacaaatctaggcctgaaaatacgtttctgttttatttcctgctgtcaaaatcggccacc 20091954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25276087 - 25276044
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttt 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  25276087 aataaaactggaacaaatctaggcccgaaaatacgtttatgttt 25276044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 22829105 - 22829171
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| |||||  ||||||  ||| ||||||||||||||||||||||||||| |||||||||||||    
T  22829105 aaaatcggccactgattttctacttccagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21678012 - 21677952
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaa 61  Q
    |||||||||  |||||||||| |||||||||||  ||| ||||||||||| ||||||||||    
T  21678012 aataaaactgaaacaaatctaagcccgaaaatatttttttgttttattttctgctgtcaaa 21677952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 11355042 - 11355005
Alignment:
Q  164 caatttcttcaattttgaggcactttcacaacaattat 201  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  11355042 caatttcttcaattttgagtcactttcacaacagttat 11355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 22490610 - 22490415
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataa 100  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||| |||||||| ||||||||||| |||||||||| ||||||||||||    
T  22490610 aataaaactggaacaaatctagacccgaaaatacgtttctgttttattttctgctatcaaaatcagccaccgatttatgccgaacctgaagctcaaataa 22490511  T
Q  101 aacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||| ||||||||||| ||||||||| |||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22490510 aacaggtcaaaatcggccaccgtgccctgaaaatcggccatcgattttcagctttcagaattctaatttcttcaattttgaggcactttcataaca 22490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10584097 - 10583884
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga--------------------tttttgc 80  Q
    ||||||||| ||||||||||||||||||||||| |||  ||||||||||| ||||||||||||||||||||||                    |||||||    
T  10584097 aataaaactggaacaaatctaggcccgaaaatatgttactgttttattttctgctgtcaaaatcggccaccgaatgctccaaatcggcaccgatttttgc 10583998  T
Q  81 cgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttg 180  Q
    ||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||||   |||||  |||||||||| ||||||||||||||||||||||||     
T  10583997 cgaacctgaagctcaaataaaacaggtcaaaatcggccactgcgccctgaaaatggaccaccggttttcagcttccagaattccaatttcttcaatttta 10583898  T
Q  181 aggcactttcacaa 194  Q
    ||||||||||||||    
T  10583897 aggcactttcacaa 10583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 13057037 - 13056949
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||| ||||| ||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  13057037 caaaatcggccaccgagccctgaaaatcggccaccaattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 3632406 - 3632494
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||| |||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3632406 caaaatcggccaccgtgctttgaaaatcgggcatcgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24338791 - 24338863
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  24338791 aataaaactggaacaaatctaggcccgaaaatacgtttatgttttattttttggtgtcaaaatcggccaccga 24338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 24338871 - 24338946
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatc 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  24338871 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatc 24338946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 24338941 - 24339028
Alignment:
Q  109 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  24338941 aaaatcggcctccgtgccctgaaaatcggccaccgattttcatcttccagaatttcaatttcttcaattttgaggcactttcacaaca 24339028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 3630354 - 3630424
Alignment:
Q  128 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3630354 tgaaaatcggccaccgattttcagcttctagaattccaatttcttcaattttgaggcactttcacaacaat 3630424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 13039597 - 13039509
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||| ||||| ||| |||||||| ||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  13039597 caaaatcggccaccgagccctgaaaatcggccaccggttttctgcttccagaatttcaatttcttcaattttgaggcactttcacaaca 13039509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13039725 - 13039657
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  13039725 aataaaactggaacaaatctaggtccgaaaatacgtttatgttttattttctgttgtcaaaatcggcca 13039657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13870764 - 13870836
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||    
T  13870764 aataaaactggaacaaatctaggcccgaaaatacgtttctattttatttcctgctgtcaaaatcggccaccga 13870836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25477245 - 25477173
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||    
T  25477245 aataaaactggaacaaatctaggcccgaaaatatgtttctgttttattttctgatgtcaaaatcggccaccga 25477173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3630207 - 3630278
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  3630207 aataaaactggaacaaatctaggcccaaaaatacgtttctgttttattttctgctgtcaaaatcgaccaccg 3630278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3632281 - 3632352
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||    
T  3632281 aataaaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggtcaccg 3632352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20220099 - 20220030
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    ||||||||| |||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||    
T  20220099 aataaaactggaacaaatctagacccgaaaatatgtttttgttttattttctgctgtcaaaatcggccac 20220030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22114083 - 22114014
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    ||||||||| |||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||    
T  22114083 aataaaactggaacaaatctagacccgaaaatatgtttttgttttattttctgctgtcaaaatcggccac 22114014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 13870818 - 13870910
Alignment:
Q  105 tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    |||||||||||| |||||  || ||||||||  ||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||    
T  13870818 tgtcaaaatcggccaccgaaccctgaaaatcgaccaccgattttctgcttccaaaattccaatttcttcaattttaaggcactttcacaacaa 13870910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12161897 - 12161960
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatc 64  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  12161897 aataaaactggaacaaatctaggcccgaaaatatgtttctgttttattttctgctgtcaaaatc 12161960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13057165 - 13057097
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||||| | || ||||||| |||||    
T  13057165 aataaaattggaacaaatctaggcccgaaaatacgtttctgttttattttctactatcaaaattggcca 13057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 25466517 - 25466587
Alignment:
Q  6 aactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgattt 76  Q
    |||| ||||||||||  |||||||||||||||||||||||||||| ||||   ||||||||| ||||||||    
T  25466517 aactggaacaaatctgagcccgaaaatacgtttatgttttattttctgctagtaaaatcggcaaccgattt 25466587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 26944967 - 26944923
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  26944967 tcagaactccaatttcttcaattttgagtcactttcacaacaatt 26944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 3028209 - 3028266
Alignment:
Q  16 aatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||| |  |||||||||| || ||||||||    
T  3028209 aatctaggctcgaaaatacgtttatgttttatatcctgctgtcaaattcagccaccga 3028266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 14466304 - 14466228
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgattttt 78  Q
    ||||||||| ||||||||||||| ||||||| |||||| ||||||||||  ||||||| ||||| ||||  |||||||    
T  14466304 aataaaactggaacaaatctagg-ccgaaaagacgtttctgttttatttcctgctgtcgaaatcagccattgattttt 14466228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 12162024 - 12162060
Alignment:
Q  160 attccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12162024 attccaatttctttaattttgaggcactttcacaaca 12162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 12161977 - 12162019
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaa 102  Q
    |||| |||||||||||||||||||| || ||||||||||||||    
T  12161977 aaattggccaccgatttttgccgaatctgaagctcaaataaaa 12162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 20219989 - 20219939
Alignment:
Q  119 accgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 169  Q
    |||||||| |||||||| |||||| ||||||||||| || |||||||||||    
T  20219989 accgtgccctgaaaatcggccaccgattttcagcttccataattccaattt 20219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 50248997 - 50249134
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||  || ||||||||||| ||||    
T  50248997 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcagcggccgattttcagcttccaga 50249096  T
Q  160 attccaatttcttcaattttgaggcactttcacaacaa 197  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50249097 attccaatttcttcaattttgaggcactttcacaacaa 50249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31489851 - 31489775
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttt 77  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||    
T  31489851 aataaaactagaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggcccccaatttt 31489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18839523 - 18839451
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  18839523 aataaaactataacaaatctaggcccgaaaatacgtttctgtttaattttctgctgtcaaaatcggccaccga 18839451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 17323872 - 17323785
Alignment:
Q  109 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||||| ||||| ||| |||||||| | |||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  17323872 aaaatcggccaccgagccctgaaaatcggtcaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 25251749 - 25251814
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaac 195  Q
    |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25251749 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 17186605 - 17186701
Alignment:
Q  113 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaattataaagaaaa 209  Q
    |||| ||||| ||| ||||||||||||||| |||||| |||| |||| || ||||||||||||||||||| | |||||||||||| ||| |||||||    
T  17186605 tcggccaccgagccctgaaaatcagccaccgattttctgcttccagattttcaatttcttcaattttgagtcgctttcacaacaaatatgaagaaaa 17186701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 25248988 - 25249056
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25248988 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactatcacaacaat 25249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 50248917 - 50248989
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| ||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||||||||||||||    
T  50248917 aataaaactggaacaaatctaggcccgtaaatatgtttctgttttaatttctgctgtcaaaatcggccaccga 50248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25251620 - 25251690
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc 71  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||| || |||||| |||||||||||||    
T  25251620 aataaaactggaacaaatctaggcccgaaaatacgtttcttttttatattctgctgttaaaatcggccacc 25251690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 31489793 - 31489724
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  31489793 aaaatcggcccccaattttctgcttccagaattccaatttcttcaattttaaggcactttcgcaacaatt 31489724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17324001 - 17323929
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||| ||||| ||||| ||||||| ||||||| ||| |||||||||||| |||||||||    
T  17324001 aataaaactggaacaaatttaggcacgaaagtacgtttctgttttaatttctgctgtcaaaattggccaccga 17323929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 18839443 - 18839306
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    ||||||||||||||||||||||||||| | ||  |||| || | |   ||||||||| ||||||||  ||||| || |||| | |||||| | |  ||||    
T  18839443 aaatcggccaccgatttttgccgaaccaacagg-caaaaaacagagtccaaaatcggccaccgtgctctgaaa-tcggccatcgattttctgttaccaga 18839346  T
Q  160 attccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  18839345 attccaatttattcaattttgaggcactttcacaataatt 18839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17186473 - 17186542
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    ||||||||| |||||||| |||| || ||||||||||| | ||||||||  |||||||||||||||||||    
T  17186473 aataaaactggaacaaatttaggtccaaaaatacgtttcttttttatttcctgctgtcaaaatcggccac 17186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25248859 - 25248931
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||| || |||| ||||||||||  |||||  ||||||||| |||||    
T  25248859 aataaaacttgaacaaatctaggcccgaaagtatgtttctgttttatttcctgctgcaaaaatcggctaccga 25248931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 43104092 - 43104030
Alignment:
Q  4 aaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcgg 66  Q
    |||||| ||||||||||| |||| |||||| |||| |||||||||||||| || |||||||||    
T  43104092 aaaactggaacaaatctaagcccaaaaatatgtttctgttttattttatgttggcaaaatcgg 43104030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 31423403 - 31423437
Alignment:
Q  164 caatttcttcaattttgaggcactttcacaacaat 198  Q
    ||||||||||||||||||| |||||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaacaat 31423437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 15669891 - 15669940
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaacaattataaa 204  Q
    |||||| |||||||||||||||||| ||  |||||||||||| |||||||    
T  15669891 tcagaactccaatttcttcaattttaagttactttcacaacatttataaa 15669940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 18801068 - 18801109
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| ||||||| ||||||||||||| |||||||||||||    
T  18801068 tcagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 16430857 - 16430821
Alignment:
Q  162 tccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||||| |||||||||||| |||||||||||||||    
T  16430857 tccaatttattcaattttgagtcactttcacaacaat 16430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  164 caatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||||||||||||| |||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 50308045 - 50308085
Alignment:
Q  164 caatttcttcaattttgaggcactttcacaacaattataaa 204  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  50308045 caatttctccaattttgagtcactttcacaacaatgataaa 50308085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 36011743 - 36011524
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaa---------------------atcggccaccgatttttg 79  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||                     ||||||||||||||||||    
T  36011743 aataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttatgttgtcaaaatcgaccacctaatgctccaaatcggccaccgatttttg 36011644  T
Q  80 ccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaatttt 179  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||  |||||| ||||||| ||| |||| |||||||||||||||||||    
T  36011643 ccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccttgaaaattggccaccgattttcaccttccagatttccaatttcttcaatttt 36011544  T
Q  180 gaggcactttcacaacaatt 199  Q
    ||||||||||||||||||||    
T  36011543 gaggcactttcacaacaatt 36011524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 1627104 - 1627238
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| | |||||||| |||||| ||||||||||| ||||    
T  1627104 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgtgtcctgaaaatcggccaccgattttcagcttccaga 1627203  T
Q  160 attccaatttcttcaattttgaggcactttcacaa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  1627204 attccaatttcttcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 5927188 - 5927325
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    |||||||||| ||||   || ||||||  |||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||| || |    
T  5927188 aaatcggccatcgataaatgtcgaaccagaagctcaaataaaacaggtcaaaatcggccaccgtgctctgaaaatcagccaccgattttcagcttccaaa 5927287  T
Q  160 attccaatttcttcaattttgaggcactttcacaacaa 197  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5927288 attccaatttcttcaattttaaggcactttcacaacaa 5927325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43423804 - 43424000
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaa-tacgtttatgttttattttatgctgtcaaaa-tcggccaccgatttttgccgaacctaaagctcaaat 98  Q
    ||||||||| |||||||||||||||| |||| ||||||| | ||||||||| ||||||||||| |||||||||||||||||||||| ||||    ||||     
T  43423804 aataaaactggaacaaatctaggcccaaaaaatacgtttctattttattttttgctgtcaaaaatcggccaccgatttttgccgaa-ctaacaaacaaaa 43423902  T
Q  99 aaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    || | |   ||||||||| |||||||   || | ||| ||||||  |||||  ||  |||||||||||||||||||||||||||||||||||||||||    
T  43423903 aacagagtccaaaatcggccaccgtggtctggatatcggccaccggttttctactaccagaattccaatttcttcaattttgaggcactttcacaaca 43424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28137636 - 28137708
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  28137636 aataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 28137708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 196
Target Start/End: Original strand, 53468879 - 53469002
Alignment:
Q  63 tcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaatt 162  Q
    |||||||||| |||||||||||||| ||||||||||||||   ||||||||||| ||||||||| |||||||| ||          ||||||  ||||||    
T  53468879 tcggccaccggtttttgccgaacctgaagctcaaataaaaatggtcaaaatcggccaccgtgccctgaaaatcggc----------cagcttatagaatt 53468968  T
Q  163 ccaatttcttcaattttgaggcactttcacaaca 196  Q
    | ||||||||||||||||||||||||||||||||    
T  53468969 ctaatttcttcaattttgaggcactttcacaaca 53469002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 28102471 - 28102558
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattcc-aatttcttcaattttgaggcactttcacaa 194  Q
    ||||||||| |||||  ||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  28102471 caaaatcggccaccgaaccttgaaaatcagcccccgattttctgctttcagaattccaaatttattcaattttgaggcactttcacaa 28102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 28100383 - 28100452
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc 71  Q
    |||||||| ||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  28100383 ataaaactggaacaaatccaggcccgaaaatacgttagtgttttattttctgctgtcaaaatcggccacc 28100452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4663835 - 4663763
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||||| | |||| |||||||||||||||    
T  4663835 aataaaactagaacaaatctaagcctgaaaatacgtttctgttttattttctactgtaaaaatcggccaccga 4663763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 7754139 - 7754063
Alignment:
Q  120 ccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||| |||||||| |||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7754139 ccgtgccctgaaaatcggccagcgatttttagcttccagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 28102344 - 28102412
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    |||||||| ||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  28102344 ataaaactggaacaaatccaggcccgaaaatacgttagtgttttattttctgctgtcaaaatcggccac 28102412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 28137765 - 28137833
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||| |||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28137765 aaaatcggccaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 28100530 - 28100600
Alignment:
Q  128 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||||| |||| | ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28100530 tgaaaatcggccatcgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1627024 - 1627084
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaa 61  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  1627024 aataaaactggaacaaatctaggctcgaaaatacgtttctgttttattttttgctgtcaaa 1627084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 53468796 - 53468868
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||| | ||||||||||||||||||||||| |||| ||||||||||| || ||| |||||||||||||||    
T  53468796 aataaaaatggaacaaatctaggcccgaaaatatgtttctgttttattttctgttgttaaaatcggccaccga 53468868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43421756 - 43421826
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||| |||||||||||||||| |||||||| || | ||||||||| |||||||||||||||||||||    
T  43421756 aataaaactggaacaaatctaggcccaaaaatacg-ttctattttattttctgctgtcaaaatcggccaccg 43421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 43421883 - 43421974
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    ||||||||| ||||||   ||||||||| ||||   |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  43421883 caaaatcggccaccgtagtttgaaaatcggccatttattttctgctacctgaattccaatttcttcaattttgaggcactttcacaacaatt 43421974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 8183163 - 8183249
Alignment:
Q  110 aaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||| ||||||||  ||||||||   |||  |||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  8183163 aaatcggccaccgtgctctgaaaatcgatcactgattttctgctatcagaatttcaatttcttcaattttgaggcactttcacaaca 8183249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 1673888 - 1673826
Alignment:
Q  4 aaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcgg 66  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| || || |||||||||    
T  1673888 aaaactagaacaaatctaagcccgaaaatacatttctgttttattttctggtggcaaaatcgg 1673826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 562104 - 562174
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    |||||| | |||||||||| ||||||||||||||||| ||||||||||  |||| ||||| |||||||||||    
T  562104 ataaaaatggaacaaatct-ggcccgaaaatacgtttctgttttatttcctgctctcaaattcggccaccga 562174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 25635163 - 25635120
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  25635163 tcagaactccaatttcttcaattttgagtcactttcacaacaat 25635120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 562207 - 562249
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  562207 tcagaactccaatttcttcaattttgagtcactttcacaacaa 562249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 7754137 - 7754187
Alignment:
Q  64 cggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatc 114  Q
    |||||| ||||||||||||||| | |||||||||||||||| |||||||||    
T  7754137 cggccatcgatttttgccgaacttgaagctcaaataaaacaggtcaaaatc 7754187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 54884034 - 54884000
Alignment:
Q  52 tgctgtcaaaatcggccaccgatttttgccgaacc 86  Q
    |||||||||||||||||||||||||||||||||||    
T  54884034 tgctgtcaaaatcggccaccgatttttgccgaacc 54884000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 13420686 - 13420727
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  13420686 tcagaactccaatttcttcaattttgagtcactttcacaaca 13420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28180940 - 28180891
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttatttt 50  Q
    ||||||||| ||||||||| |||||||||||||||||| | |||||||||    
T  28180940 aataaaactggaacaaatcgaggcccgaaaatacgtttctattttatttt 28180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 23633375 - 23633311
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcgg 66  Q
    |||||| | |||||||||||||| ||||||||||||| |||| |||||| ||||| |||| ||||    
T  23633375 ataaaattggaacaaatctaggctcgaaaatacgtttctgttatattttctgctggcaaattcgg 23633311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 25633272 - 25633231
Alignment:
Q  155 tcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  25633272 tcagaactccaatttcttcaattttgaatcactttcacaaca 25633231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 23636761 - 23636725
Alignment:
Q  162 tccaatttcttcaattttgaggcactttcacaacaat 198  Q
    |||||||||| |||||||||| |||||||||||||||    
T  23636761 tccaatttctccaattttgagtcactttcacaacaat 23636725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 14837106 - 14836971
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||| ||||    
T  14837106 aaatcggccgccgatttttgccgaacctgaagctcaaataaaacatgtcaaaatcggccaccgtgccctgaaaa-cggccaccaattttcagcttccaga 14837008  T
Q  160 attccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14837007 attctaatttcttcaattttgaggcactttcacaaca 14836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 34979922 - 34980136
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga---------------------tttttg 79  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||                     ||||||    
T  34979922 aataaaactggaacaaatctaggcccgaagatacgtttctgttttattttctgctgtgaaaatcggccaccgaatgctccaaattgggccccgatttttg 34980021  T
Q  80 ccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaatttt 179  Q
    || ||||||||||||||||||| || ||||||||||| ||||||| | | |||||| |||||| |||||||||||  ||||||| |||||||||||||||    
T  34980022 ccaaacctaaagctcaaataaagcaggtcaaaatcggccaccgtgtcctaaaaatcggccaccgattttcagcttctagaattctaatttcttcaatttt 34980121  T
Q  180 gaggcactttcacaa 194  Q
    |||||| ||||||||    
T  34980122 gaggcattttcacaa 34980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11739903 - 11739988
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacc 86  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  11739903 aataaaactggaacaaatctagacacgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccgatttttgccgaacc 11739988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 15539947 - 15540038
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    ||||||||| ||||| |||||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15539947 caaaatcggccaccgagccttgaaaatcggccatcgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaacaatt 15540038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15539818 - 15539890
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  15539818 aataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 15539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 11740009 - 11740078
Alignment:
Q  127 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11740009 ttgaaaatcggccaccgattttcaactttcagaattccaatttcttcaattttgaggcactttcacaaca 11740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38020055 - 38019970
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacc 86  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||| |||||    
T  38020055 aataaaactggaataaatctaggcccgaaaatacgtttctgttttattttctactgtcaaaatcggccactgatttttgctgaacc 38019970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 22163419 - 22163485
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22163419 aaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 3021917 - 3021839
Alignment:
Q  118 caccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||| ||| |||||||| |||||  |||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  3021917 caccgagccctgaaaatcggccacggatttcctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 3021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3022075 - 3022006
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccac 70  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  3022075 aataaaactccaacaaatctaggcccgaaaatacgtttctgttttatttcctgctatcaaaatcggccac 3022006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22163290 - 22163358
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||  |||||||||||| |||||    
T  22163290 aataaaactggaacaaatctaggcccgaaaatacatttctgttttatttcctgctgtcaaaattggcca 22163358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 196
Target Start/End: Complemental strand, 38019915 - 38019884
Alignment:
Q  165 aatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||||||||||||||||||||||||||    
T  38019915 aatttcttcaattttgaggcactttcacaaca 38019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14837185 - 14837121
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcgg 66  Q
    ||||||||| || |||||||| || ||||||||||||| | |||| |||| |||||||||||||||    
T  14837185 aataaaactggagcaaatctaagctcgaaaatacgtttgt-tttttttttctgctgtcaaaatcgg 14837121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 24126712 - 24126579
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    ||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||||   || || | ||||||||||||||||||  |||    
T  24126712 aaatcggccaccgatttttgccgaatctgaagctcaaacaaaacaggtcaaaatcggccaccgtgc---gacaaccggccaccaattttcagcttctaga 24126616  T
Q  160 attccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24126615 attccaatttcttcaattttgagacactttcacaaca 24126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 2723823 - 2723698
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 159  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||        ||| ||||||||||| ||||    
T  2723823 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaa--------accgattttcagcttccaga 2723732  T
Q  160 attccaatttcttcaattttgaggcactttcaca 193  Q
    ||||||||||||||||||||||||||||||||||    
T  2723731 attccaatttcttcaattttgaggcactttcaca 2723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 10474746 - 10474856
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaa-ttttcagctttcag 158  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||| |||    
T  10474746 aaatcggccaccgattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccaccaatttttcagcttccag 10474845  T
Q  159 aattccaattt 169  Q
    |||||||||||    
T  10474846 aattccaattt 10474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 17072739 - 17072619
Alignment:
Q  60 aaatcggccaccgattttt-gccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 158  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||     
T  17072739 aaatcggccaccgattttttgccgaacttgaagctcaaataaaacaggtcaaaatcggccactgtaccttgaaaatcggccaccgattttcagctttcaa 17072640  T
Q  159 aattccaatttcttcaatttt 179  Q
    |||||||||||||| ||||||    
T  17072639 aattccaatttctttaatttt 17072619  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10474666 - 10474738
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  10474666 aataaaactggaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggccaccga 10474738  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39398335 - 39398405
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccg 72  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  39398335 aataaaactggaacaaatctaggcccgaaaatacgtttatgttttattttctgctgtc-aaatcggccaccg 39398405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 695697 - 695631
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  695697 aaaatcggccaccaattttcagcttccagaatttcaatttcttcaattttgaggcactttcacaaca 695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17072819 - 17072747
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||    
T  17072819 aataaaaatggaacaaatctaggcctgaaaatacgtttatgttttattttctactgtcaaaatcggccaccga 17072747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24126792 - 24126720
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| |||||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  24126792 aataaaactggaacaaatctagactcgaaaatacatttatgttttattttctgctgtcaaaatcggccaccga 24126720  T

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Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 2723893 - 2723833
Alignment:
Q  11 gaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccacc 71  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  2723893 gaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccacc 2723833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 20044946 - 20044755
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataa 100  Q
    ||||||||| |||||||||||| ||||||||||| ||| |||||||||   | |||||||||||||||||||||   || |||||| || || |||| ||    
T  20044946 aataaaactggaacaaatctagacccgaaaatacatttctgttttattccctactgtcaaaatcggccaccgataaatgtcgaaccaaaggc-caaaaaa 20044848  T
Q  101 aaca---tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    ||||   || |||| |||| ||||| |||  |       |||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  20044847 aacaaactg-caaattcggccaccgagcccgg-------gccaccgattttctgcttccagaattccaatttcttcaattttgagtcactttcacaacaa 20044756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 20042858 - 20042770
Alignment:
Q  108 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
    |||| |||| ||||||||| |||||||| |||| ||||||||  ||| |||||||||||||||||||||||| |  |||||||||||||    
T  20042858 caaattcggccaccgtgccctgaaaatcggccatcaattttcttcttccagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20042986 - 20042914
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||||||||  || | |||||||||||||||||    
T  20042986 aataaaactggaataaatctaggcccgaaaatacgtttctgttttatttcctgatctcaaaatcggccaccga 20042914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 34531011 - 34531080
Alignment:
Q  4 aaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| | || || || |||||||||||    
T  34531011 aaaactggaacaaatctaggcctgaaaatacgtttatgttttattttctactatcgaattcggccaccga 34531080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 695825 - 695758
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||||| ||||||||||||||  |||| |||||||||||| |||||| || || ||||||||||||    
T  695825 aataaaactggaacaaatctaggcttgaaa-tacgtttatgttatattttctgttggcaaaatcggcca 695758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 15186054 - 15186247
Alignment:
Q  2 ataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccgatttttgccgaacctaaagctcaaataaa 101  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||   ||  |||||| |||||| ||| |||    
T  15186054 ataaaattggaacaaatctaggcccgaaaatacgtttctgttttatttcctgctgtcaaaatcggccaccgaaaattcacgaacc-aaagctgaaa-aaa 15186151  T
Q  102 acat-gtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 196  Q
     ||| ||  || |||| ||||| ||| ||||||||  | ||| |||||  |||| || |||||| ||||||||||||||||| |||||||||||||    
T  15186152 tcatagtgcaattcggccaccgagccctgaaaatcgacgaccgattttttgcttccataattcctatttcttcaattttgagtcactttcacaaca 15186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 27107320 - 27107458
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacat-gtc-aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttca 157  Q
    ||||||||||||||||||||||||||| || ||    ||||||||  ||| |||||||| |||| |||  |||||||| |||| | ||||||||||| ||    
T  27107320 aaatcggccaccgatttttgccgaaccaaaggcc---ataaaacagagtccaaaatcggccaccatgctctgaaaatcggccatcgattttcagcttcca 27107416  T
Q  158 gaattccaatttcttcaattttgaggcactttcacaacaatt 199  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27107417 gaattctaatttcttcaattttgaggcactttcacaacaatt 27107458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 26775114 - 26774978
Alignment:
Q  60 aaatcggccaccgatttttgccgaacctaaagctcaaataaa-acatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 158  Q
    ||||||| |||||| ||||||||||| |||||  |||| ||| | ||  |||||||||||| |||||  |||||||| |||||| |||||| |||  |||    
T  26775114 aaatcgggcaccgacttttgccgaac-taaaggccaaaaaaacagattccaaaatcggtcaacgtgctctgaaaatcggccaccgattttctgctaccag 26775016  T
Q  159 aattccaatttcttcaattttgaggcactttcacaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26775015 aattccaatttcttcaattttgaggcactttcacaaca 26774978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33541731 - 33541799
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  33541731 aataaaactcgaacaaatctaggcccgaaaatacgtttctgttttattttctgctgtcaaaatcggcca 33541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27107240 - 27107308
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggcca 69  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  27107240 aataaaactggaacaaatctaggcccgaaaatacgtttctattttattttctgctgtcaaaatcggcca 27107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 33541860 - 33541927
Alignment:
Q  130 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 197  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33541860 aaaatcggccaccgattttcagcttccagaattccaatttctttaattttgaggcactttcacaacaa 33541927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14477268 - 14477196
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| ||| |||||||| ||||||||||||||| | ||||||||  ||||||||||||||||||||||    
T  14477268 aataaaactggaataaatctagacccgaaaatacgtttctattttatttcttgctgtcaaaatcggccaccga 14477196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25952513 - 25952441
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||| ||||||||||| |||||||||||||||| |  |||||||  || |||||||||| ||| ||||    
T  25952513 aataaaactggaacaaatctaagcccgaaaatacgtttcttgtttatttcctgttgtcaaaatcagcccccga 25952441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 15949372 - 15949338
Alignment:
Q  11 gaacaaatctaggcccgaaaatacgtttatgtttt 45  Q
    |||||||||||||||||||||||| ||||||||||    
T  15949372 gaacaaatctaggcccgaaaatacatttatgtttt 15949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 26775167 - 26775122
Alignment:
Q  28 aaaatacgtttatgttttattttatgctgtcaaaatcggccaccga 73  Q
    ||||||||||| |||| |||||  ||||||||||||||||||||||    
T  26775167 aaaatacgtttctgttctatttcctgctgtcaaaatcggccaccga 26775122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5372520 - 5372568
Alignment:
Q  1 aataaaactagaacaaatctaggcccgaaaatacgtttatgttttattt 49  Q
    |||| |||||||| |||||||| ||||||||||||||| | ||||||||    
T  5372520 aatagaactagaaaaaatctagacccgaaaatacgtttctattttattt 5372568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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