View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_16 (Length: 273)
Name: NF18279_low_16
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 268
Target Start/End: Original strand, 31059187 - 31059424
Alignment:
| Q |
43 |
gatgacattgataatgatcatttttgctagctagccaccccatagtcttattcattaatat------------agctgggtagctagttatcctattttt |
130 |
Q |
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| T |
31059187 |
gatgacattgataatgatcatttttgctagctagccaccccatagtcttattcattaatattgcatcactaatagctgggtagctagttatcctattttt |
31059286 |
T |
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| Q |
131 |
ggcactcgaaagactttcctttctttgtcgacccaaacccaaaccctagtgcacttgaaattcattggcacaagagacccttctggcaccactattgcat |
230 |
Q |
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| T |
31059287 |
ggcactcgaaagactttcccttctttgtcgacccaaacccaaaccctagtgcacttgaaattcattggcacaagagacccttccggcaccactattgcat |
31059386 |
T |
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| Q |
231 |
tcactctatgattctctctttcaatcttctctgctgct |
268 |
Q |
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| T |
31059387 |
tcactctatgattctctctttcaatcttctctactgct |
31059424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 31067930 - 31068100
Alignment:
| Q |
98 |
taatatagctgggtagctagttatcctatttttggcactcgaaagactttcctttctttgtcgacccaaacccaaaccctagtgcacttgaaattcattg |
197 |
Q |
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| T |
31067930 |
taatatagctgggtagctagttatcctatttttggcattcgagtgactctcccatgtttgtcgacccaaacccaaaccctagtgcacttgaaatccattg |
31068029 |
T |
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| Q |
198 |
gcacaagagacccttctggcaccactattgcattcactctatgattctctctttcaatcttctctgctgct |
268 |
Q |
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| T |
31068030 |
tcacaacagacccttctggcaccactattgcattcactttctcattctctctttctatcttctcagctgct |
31068100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 31067764 - 31067801
Alignment:
| Q |
46 |
gacattgataatgatcatttttgctagctagccacccc |
83 |
Q |
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| T |
31067764 |
gacattgataatgatcatttttgctagccagccacccc |
31067801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31059144 - 31059173
Alignment:
| Q |
1 |
ctttagaatagtgaatatggaagattcact |
30 |
Q |
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| T |
31059144 |
ctttagaatagtgaatatggaagattcact |
31059173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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