View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_18 (Length: 270)
Name: NF18279_low_18
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 66 - 256
Target Start/End: Complemental strand, 33272339 - 33272153
Alignment:
| Q |
66 |
attgtcctatgatctt-catcatgttgtcgttaattcttgaagaacaatgtgtgtgtatgttggtggtgcaacgtacattgccttgaatgttgccgagaa |
164 |
Q |
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| T |
33272339 |
attgtcctatgatttttcgtcatgttgtcgttaattcttgaagaacaatgtgtgtgtatgttggtggtgcaacgtacattgccttgaatgttgccgagaa |
33272240 |
T |
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| Q |
165 |
aataaatatacaagattggaaatataaattgtattcagaatgnnnnnnnntgtgtttacgtcaaagatctacataacttatgttccattttt |
256 |
Q |
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| T |
33272239 |
----aatatacaagattggaaatataaattgtattcagaatg-aaaaaaatgtgtttacatcaaagatctacataacttgtgttccattttt |
33272153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 33272516 - 33272466
Alignment:
| Q |
18 |
aaaatgatcattgatatcaccattattaatattgatttttatttgccaatt |
68 |
Q |
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| T |
33272516 |
aaaatgatcattgatatcaccattattaatattgatttttatttgccaatt |
33272466 |
T |
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