View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_19 (Length: 266)
Name: NF18279_low_19
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 4353329 - 4353573
Alignment:
| Q |
2 |
aagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccgg |
101 |
Q |
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| T |
4353329 |
aagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtaattgtcgaagcttccccggcacttcccgg |
4353428 |
T |
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| Q |
102 |
atttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgctgat |
201 |
Q |
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| T |
4353429 |
atttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgccgat |
4353528 |
T |
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| Q |
202 |
gcattcataaagaggttctactcgcagttgaggaaacaagattga |
246 |
Q |
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| T |
4353529 |
gcattcataaggaggttctactcgcagttgaggaaacaagattga |
4353573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 4358941 - 4358697
Alignment:
| Q |
2 |
aagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccgg |
101 |
Q |
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| T |
4358941 |
aagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtaattgtcgaagcttccccggcacttcccgg |
4358842 |
T |
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| Q |
102 |
atttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgctgat |
201 |
Q |
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| T |
4358841 |
atttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgccgat |
4358742 |
T |
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| Q |
202 |
gcattcataaagaggttctactcgcagttgaggaaacaagattga |
246 |
Q |
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| T |
4358741 |
gcattcataaggaggttctactcgcagttgaggaaacaagattga |
4358697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4349951 - 4350083
Alignment:
| Q |
1 |
caagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccg |
100 |
Q |
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|||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||| | |||||||| |||| || |||| |
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| T |
4349951 |
caagacgatgacattgttaccgttaatgcggttaaggctgtgttagagaaaatggtaaacaataatgaggtgataggtgaggcttccccggtgctccccg |
4350050 |
T |
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| Q |
101 |
gatttggacggactcctaaggcaaggcagttga |
133 |
Q |
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| | | |||| ||||||| | | |||||||||| |
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| T |
4350051 |
gttctcgacgaactcctatgaccaggcagttga |
4350083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 4350113 - 4350167
Alignment:
| Q |
178 |
gccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttga |
232 |
Q |
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| T |
4350113 |
gccgaggtagacaaggctgccgaagcatttataaagaggttttacttgcagttga |
4350167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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