View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_21 (Length: 260)
Name: NF18279_low_21
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 4353327 - 4353101
Alignment:
| Q |
9 |
tgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactccctt |
108 |
Q |
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| T |
4353327 |
tgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactccctt |
4353228 |
T |
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| Q |
109 |
gtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtaatggcttttccggcaagcttgctac |
208 |
Q |
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| T |
4353227 |
gtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctac |
4353129 |
T |
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| Q |
209 |
ggcgtttgaccatcatgttgaggtccat |
236 |
Q |
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| T |
4353128 |
ggcgtttgaccatcatgttgaggtccat |
4353101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 4358943 - 4359170
Alignment:
| Q |
9 |
tgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactccctt |
108 |
Q |
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| T |
4358943 |
tgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactccctt |
4359042 |
T |
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| Q |
109 |
gtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtaatggcttttccggcaagcttgctac |
208 |
Q |
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| T |
4359043 |
gtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgc |
4359142 |
T |
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| Q |
209 |
ggcgtttgaccatcatgttgaggtccat |
236 |
Q |
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| T |
4359143 |
ggcgtttaaccatcatgttgaggtccat |
4359170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 4349887 - 4349714
Alignment:
| Q |
63 |
aaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtgg |
162 |
Q |
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| T |
4349887 |
aaatttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtgg |
4349788 |
T |
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| Q |
163 |
tgatgaaacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttgaggtccat |
236 |
Q |
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| T |
4349787 |
tgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccat |
4349714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4349958 - 4349919
Alignment:
| Q |
1 |
tcgttttgtgtgagaggcgcgtgagtacacgtgaagaagt |
40 |
Q |
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| T |
4349958 |
tcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagt |
4349919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 43475430 - 43475539
Alignment:
| Q |
133 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgt |
226 |
Q |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
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| Q |
227 |
tgaggtccat |
236 |
Q |
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| T |
43475530 |
ttaggcccat |
43475539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 43486091 - 43486158
Alignment:
| Q |
169 |
aacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttgaggtccat |
236 |
Q |
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| T |
43486091 |
aacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccat |
43486158 |
T |
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