View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_26 (Length: 237)
Name: NF18279_low_26
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 12355547 - 12355328
Alignment:
| Q |
16 |
tgtcatatgttcaacaattcatacatatatcatgaggtttatacattgttgtttcaaaggattttgaactcaaatgatttagttttttaaaaactactaa |
115 |
Q |
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| T |
12355547 |
tgtcatatgtttaacaattcatacatat--catgaggtttatacattgttgtttcaaaggattttgaactcaaatgatttagttttttaaaaaccactaa |
12355450 |
T |
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| Q |
116 |
ctcacaactatcacaccctacgtccattatctctcttttgagtatagagaatttcaaaccctaaacttcagaaacacttctataatctttctacaatcaa |
215 |
Q |
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|||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12355449 |
ctcacagctatcacactctacgtccattatctctcttttaagtatagagaatttcaaaccctaaacttcagaaacacttctataatctttctacaatcaa |
12355350 |
T |
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| Q |
216 |
ttgtttcaatgaccaatcttcc |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
12355349 |
ttgtttcaatgaccaatcttcc |
12355328 |
T |
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