View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_27 (Length: 236)
Name: NF18279_low_27
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 31059029 - 31058821
Alignment:
| Q |
12 |
cacagataatttgatcatgagattctaccgctactacaacacctaagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtttaattaacaa |
111 |
Q |
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| T |
31059029 |
cacaaataatttgatcatgagattctaccgctactacaacacctaagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtttaattaacaa |
31058930 |
T |
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| Q |
112 |
gtaataagatcttgttggtatatcaagtgtgtaa-ctattaagagactcgtttgtatgacttctcaaaaatcaatgtgaagatatcgtcttcccttgaag |
210 |
Q |
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| T |
31058929 |
gtaataagatcttgttggtatatcaaatgtgtaatttattaagagactcgtttgtatgacttctcaaaaatcaatgtgaagatatcttcttcccttgaag |
31058830 |
T |
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| Q |
211 |
acacgaaaa |
219 |
Q |
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| T |
31058829 |
acacgaaaa |
31058821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 31067714 - 31067629
Alignment:
| Q |
56 |
aagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtt----taattaacaagtaataagatcttgttggtatatcaa |
137 |
Q |
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| T |
31067714 |
aagcttaacaatgttggccgaatagcgttttctctgctgaaacgtttaactaattaacaagtaacaagatcttgatggtatatcaa |
31067629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 31067562 - 31067499
Alignment:
| Q |
151 |
aagagactcgtttgtatgacttctcaaaaatcaatgtgaagatatcgtcttcccttgaagacac |
214 |
Q |
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| T |
31067562 |
aagagactcatttgtatggcttctcaaaaatcaaagaaaatatattatcttcccttgaagacac |
31067499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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