View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_29 (Length: 219)
Name: NF18279_low_29
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 41847231 - 41847420
Alignment:
| Q |
13 |
caaaggtaaagggaaatagattagacaaaccatgaagaagagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcata |
112 |
Q |
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| T |
41847231 |
caaaggtaaagggcaatagattagacaaaccatgaagaagagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcata |
41847330 |
T |
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| Q |
113 |
ataataagctttaagtctaacaacattaggatgtctaagcttccccacaacatccatatactgttcaaactgattcctatcacaaggatt |
202 |
Q |
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| T |
41847331 |
ataataagctttaagtctaacaacattaggatgtctaagcttccccacaacatccatatactgttcaaactgattcctatcacaaggatt |
41847420 |
T |
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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 26889830 - 26889663
Alignment:
| Q |
35 |
agacaaaccatgaagaagagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaaca |
134 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
26889830 |
agactaaccatgaagaagagcatgcaagctcccattggagagataatcatagacaagaagcttttcttccttggcataataataagctctaagtttaaca |
26889731 |
T |
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| Q |
135 |
acattaggatgtctaagcttccccacaacatccatatactgttcaaactgattcctatcacaaggatt |
202 |
Q |
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| T |
26889730 |
atgttagggtgtttaagcttcccaatcacatccatatactgttcaaattcatgcctagcacaaggatt |
26889663 |
T |
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