View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_3 (Length: 481)
Name: NF18279_low_3
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 21358463 - 21358912
Alignment:
| Q |
15 |
cacagacaacggacataacaccaaggtctataataatttgagaaaataaaaacgattgaaagtatgtgtctgtgccgtatgagtgtcagacaaaatgtgc |
114 |
Q |
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| T |
21358463 |
cacagacaacggacataacaccaaggtctataataatttgagaaaataaaaacgattgaaagtatgtgtctgtgccgtatgagtgtcagacaaaatgtgc |
21358562 |
T |
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| Q |
115 |
tagacactcaaagaaatgttgctgctacatagcattgaatgaatcttgaaaaagaaattgcaaatgacatgcacgaccggtaagcctaatcttaaactca |
214 |
Q |
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| T |
21358563 |
tagacactcaaagaaatgttgctgctacatagcattgaatgaatcttgaaaaagaaattgcaaatgacatgcacgactagtaagcctaatcttaaactca |
21358662 |
T |
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| Q |
215 |
cccggtgaaagctctctcagttccctttttccgagtaacataaaattgttcatcggttagctgcttcttccattctgcatcacttaaagatttataatca |
314 |
Q |
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| T |
21358663 |
cccggtgaaagctctctcagttccctttttccgagtaacataaaattgttcatcggttagctgcttcttccattctgcatcacttaaagatttataatca |
21358762 |
T |
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| Q |
315 |
acaggactagatcctgcaaagcacataaagaagttgttggattggaggaccaaagc----atatatatctatctctttattacttttatttctacaattt |
410 |
Q |
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| T |
21358763 |
acaggactagatcctgcaaagcacataaagaagttgttggattggaggaccaatgcatatatatatatctatctctttattacttttatttctacaattt |
21358862 |
T |
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| Q |
411 |
acgcacatttcaataatacacacaaaaagtaagtgattgacagtacacta |
460 |
Q |
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| T |
21358863 |
acgcacatttcaataatacacacaaaaagtaagtgattgacagtacacta |
21358912 |
T |
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