View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_5 (Length: 439)
Name: NF18279_low_5
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 24740676 - 24741072
Alignment:
| Q |
21 |
tacacatcatcgccaccaaattcagctcacctttttcctttccttcttgtaggaccaaatcccctcttttcgtgactataatagtatattaatgcgcttg |
120 |
Q |
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| T |
24740676 |
tacacatcatcgccacctaattcagctcacctttttcctttccttcttgaaggaccaaatcccctcttttcgtgactataatagtatattaatgcgcttg |
24740775 |
T |
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| Q |
121 |
tctccatttaaaatcattttattaattacctgtcctgactttttactaacattcaaattgccaatatcaacaagtcaaaccccaacctccaacacttaat |
220 |
Q |
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| T |
24740776 |
tctccatttaaaatcattttattaattacctgtcctgactttttactaacattcaaattgccaatatcaacaagtcaaaccccaacc-ccaacacttaat |
24740874 |
T |
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| Q |
221 |
gtggcaaggaaattaaattttgatctatctgcatgagtacctctcacactttgggtcaagatatttaaagaataagatactaagatatcaatcatatcac |
320 |
Q |
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| T |
24740875 |
gtggcaaggaaattaaattttgatctatctgcatgagtacctctcacactttgggtcaagatatttaaagaataagatactaagat----atcatatcac |
24740970 |
T |
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| Q |
321 |
agattatatagcttaacggtaggctaactagttactgtagtttcttcacgtgtttatataatgttcttgacttgttgattaagttgcttttaagtaacta |
420 |
Q |
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| T |
24740971 |
agattatatagcttaacggtaggctaactagttactgtagtttcttcacgtgtttatataatgttcttgacttgttgattaagttgcttttaagtaacta |
24741070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 24721060 - 24721109
Alignment:
| Q |
319 |
acagattatatagcttaacggtaggctaactagttactgtagtttcttca |
368 |
Q |
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| T |
24721060 |
acagattatatagcttaacggtaggttaactagttcatgtagtttcttca |
24721109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 24729733 - 24729782
Alignment:
| Q |
319 |
acagattatatagcttaacggtaggctaactagttactgtagtttcttca |
368 |
Q |
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| T |
24729733 |
acagattatatagcataacggtaggttaactagttcacgtagtttcttca |
24729782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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