View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_7 (Length: 410)
Name: NF18279_low_7
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 103 - 400
Target Start/End: Complemental strand, 33227664 - 33227366
Alignment:
| Q |
103 |
tataataaactttgatgaagaataatgctttgcaa-tattatctttttggaaacaattaaaatattcttcaatatgcaatcctaccaatccaaaccagag |
201 |
Q |
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| T |
33227664 |
tataataaactttgatgaagaataatgctttgcaaatattatctttttggaaacagttaaaatattcttcaatatgcaatcctaccaatccaaaccagag |
33227565 |
T |
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| Q |
202 |
agaagcagaattggcacctatagaattatacattgatctatatatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaa |
301 |
Q |
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| T |
33227564 |
agaagcagaattggcacctatagaattatacattgatctatatatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaa |
33227465 |
T |
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| Q |
302 |
tgctccttgctaaaagtctcctcttttatggtctagtcaaggtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatt |
400 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33227464 |
tgctccttgctaaaagtctcctctcttatggtctagtcaaggtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatt |
33227366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 33225351 - 33225234
Alignment:
| Q |
243 |
atatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaatgctccttgctaaaagtctcctcttttatggtctagtcaag |
342 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| | |||||||| | || || ||| |||||||||| |
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| T |
33225351 |
atatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatgcttgctaattggct-ttcaagtatcctctagtcaag |
33225253 |
T |
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| Q |
343 |
gtatgtaacctattataat |
361 |
Q |
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| T |
33225252 |
gtatgtaacctattataat |
33225234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 33227723 - 33227687
Alignment:
| Q |
44 |
gtagcatggaagatatgaactggaattagatgccatc |
80 |
Q |
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| T |
33227723 |
gtagcgtggaagatatgaactggaattagatgccatc |
33227687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 33250631 - 33250593
Alignment:
| Q |
333 |
tctagtcaaggtatgtaacctattataatttcaggttgt |
371 |
Q |
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| T |
33250631 |
tctagtcaaggcatgtaccctattataatttcaggttgt |
33250593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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