View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18279_low_8 (Length: 409)
Name: NF18279_low_8
Description: NF18279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18279_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 6999051 - 6998699
Alignment:
| Q |
5 |
gagtgagatgaagtctcgtgtaaatagttccagtatcacaagtacaaatattttgaacagttggaatgtaa-catcatcccttagcaaacttgctcaaaa |
103 |
Q |
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| T |
6999051 |
gagtgcgatgaagtctcgtgtcaatagtcccagtatcacaagtacaaatattttgaacagttggaatgtatgcatcatcccttagcaaacttgctcaaaa |
6998952 |
T |
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| Q |
104 |
aatttaccaagaaaatgttgattcctgcataaaatgttagtagacaattctgagacaatgattcgaggtatatctaagaatatgagtatttgagtaatta |
203 |
Q |
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| T |
6998951 |
aatttaccaagaaaatgttgattcctgcataaaatgttagtagacaattctgagacaatgattcgaggtatatctaagaatatgagtatttgagtaatta |
6998852 |
T |
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| Q |
204 |
agagaggaggaaatccaaccactagtggctagaagtttatccaacctagattttatgtgatgatgatcgtgttgattattagcccagattttaacgagga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998851 |
agagaggaggaaatccaaccactagtggctagaagtttatccaacctagattttatgtgatgatgatcgtgttgattattagcccagattttaacgagga |
6998752 |
T |
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| Q |
304 |
aagaacgaatagaaaaggaaaggcagattagagtacacagaaaattaaggagt |
356 |
Q |
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| T |
6998751 |
aagaacgaatagaaaaggaaaggcagattagagtacacagaaaattaaggagt |
6998699 |
T |
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