View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18280_high_5 (Length: 320)
Name: NF18280_high_5
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18280_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 44631009 - 44631304
Alignment:
| Q |
16 |
catgaatgtaccagttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtg |
115 |
Q |
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| T |
44631009 |
catgaatgtaccagttaaacaagatatcctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtg |
44631108 |
T |
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| Q |
116 |
acgtgttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44631109 |
acgtgttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctatatgtggctt |
44631208 |
T |
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| Q |
216 |
gtatataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgt |
311 |
Q |
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| T |
44631209 |
gtatataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgt |
44631304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 44637832 - 44637595
Alignment:
| Q |
20 |
aatgtaccagttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatg-aaatatcgatctttctgttgttgaggactatgtcgtgacg |
118 |
Q |
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| T |
44637832 |
aatgtacccgtttaacaataaatactatagtagaggtttctaggatttgtactggcatgtaaacatggcacct-ctcctgtcgaggactatgtcatgatg |
44637734 |
T |
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| Q |
119 |
tg-ttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgt |
217 |
Q |
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| T |
44637733 |
gggttcgatatgtttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtctatacgtagctcgt |
44637634 |
T |
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| Q |
218 |
atataaatgtttggtcgaaatcgtttgaatttcttgcat |
256 |
Q |
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||| | ||||||||||||||| |||||||||||||||| |
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| T |
44637633 |
ataccagtgtttggtcgaaatcatttgaatttcttgcat |
44637595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 44681524 - 44681646
Alignment:
| Q |
28 |
agttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaata-tcgatctttctgttgttgaggactatgtcgtgacgtg-ttcga |
125 |
Q |
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| T |
44681524 |
agttaaacaagaaaatctatagcagaggtttctgagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgtttcga |
44681623 |
T |
|
| Q |
126 |
tatacttttagtgtttattttac |
148 |
Q |
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|||| || || ||||| |||||| |
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| T |
44681624 |
tatatttgtactgtttgttttac |
44681646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 44652524 - 44652629
Alignment:
| Q |
44 |
ctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtg-ttcgatatacttttagtgttta |
142 |
Q |
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|||||| ||||||||||| |||| ||||||||||||| | ||| | ||| ||||||||||||||||||||| || ||||||||| || || ||||| |
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| T |
44652524 |
ctatagcagaggtttctaacatttttattggcatgaaaatttgatttctctcttgttgaggactatgtcgtgatatgtttcgatatatttgtactgtttg |
44652623 |
T |
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| Q |
143 |
ttttac |
148 |
Q |
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|||||| |
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|
| T |
44652624 |
ttttac |
44652629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 44691419 - 44691453
Alignment:
| Q |
209 |
gtggcttgtatataaatgtttggtcgaaatcgttt |
243 |
Q |
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| T |
44691419 |
gtggcttgtatataaatgtttggtagaaatcgttt |
44691453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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