View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18280_low_10 (Length: 269)
Name: NF18280_low_10
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18280_low_10 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 22247977 - 22247738
Alignment:
| Q |
18 |
ctcatgagcccaaaaataaaacatgaacctggaaaacagggtgttaacagaaaatatcaacgataacatatacagaaactaaaatatgagagagaatttg |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
22247977 |
ctcatgagcccaaaaataaaacatgaacttggaaaacagggtgttaacagaaaatatcaaggataacatatacagaaactaaaatatgatagagaatttg |
22247878 |
T |
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| Q |
118 |
aagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatcccaatcaaatccactttgactgaggat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22247877 |
aagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatcccgatcaaatccactttgactgaggat |
22247778 |
T |
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| Q |
218 |
atcacttactatctcgtaccatcctcgccaaagtttgatg |
257 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
22247777 |
atcacttactatctcgtaccatccttgccaaagtttgatg |
22247738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 255
Target Start/End: Complemental strand, 41316348 - 41316219
Alignment:
| Q |
126 |
aataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatcccaatcaaatccactttgactgaggatatcactta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||| || |||| | |||||||| |||||||| |||||||||| |||||| | | |
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| T |
41316348 |
aataccttgacatattcattccatgcattttcatcttcgacggtaatcatacagtttgtgccatcccaaccaaatccattttgactgagaatatcattaa |
41316249 |
T |
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| Q |
226 |
ctatctcgtaccatcctcgccaaagtttga |
255 |
Q |
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| T |
41316248 |
ctatcccataccatcttcgccaaagtttga |
41316219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 3297861 - 3297658
Alignment:
| Q |
18 |
ctcatgagcccaaaaataaaacatgaacctggaaaacagggtgttaacagaaaatatcaacgataacatatacagaaactaaaatatgagagagaatttg |
117 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
3297861 |
ctcatgagcccaaaaataaaacatgaacttggcgaacagggtgttaacataaaatatcaaggataac-------gaaactaaaatatgatagagaatttg |
3297769 |
T |
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| Q |
118 |
aagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatcccaatcaaatccactttgactgaggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
3297768 |
aagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttgggtcatcccaatcaaatccactttgcctgaggat |
3297669 |
T |
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| Q |
218 |
atcacttacta |
228 |
Q |
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|||||| |||| |
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| T |
3297668 |
atcactaacta |
3297658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 44612309 - 44612133
Alignment:
| Q |
80 |
ataacatatacagaaactaaaatatgagagagaatttgaagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcat |
179 |
Q |
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|||||||| | ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44612309 |
ataacataaagagaaattaaaatatgatagagaaattgaagtatgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcat |
44612210 |
T |
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| Q |
180 |
tttggggcatcccaatcaaatccactttgactgaggatatcacttactatctcgtaccatcctcgccaaagtttgat |
256 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44612209 |
tttggggcatcccaatcaaatccactttgactaagaatatcacttactatcccgtaccatcctcgccaaagtttgat |
44612133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 9787 - 9952
Alignment:
| Q |
91 |
agaaactaaaatatgagagagaatttgaagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcattttggggcatc |
190 |
Q |
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||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9787 |
agaaattaaaatatgatagagaaattgaagtatgaaataccttgacatattcattccatgcattttcatcttcgacattaatcatgcattttggggcatt |
9886 |
T |
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| Q |
191 |
ccaatcaaatccactttgactgaggatatcacttactatctcgtaccatcctcgccaaagtttgat |
256 |
Q |
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| T |
9887 |
ccaatcaaatccactttgactaagaatatcacttactatcccgtaccatcctcaccaaagtttgat |
9952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 1991758 - 1991587
Alignment:
| Q |
80 |
ataacatatacagaaactaaaatatgagagagaatttgaagtatgaaataccttgacatattcattccatgcattttcatcttcaacattaatcatgcat |
179 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
1991758 |
ataacatatagagaaattaaaatatgatagagaaattgaagtatgaaatacctt-acatattcattccatttattttcatcttcgacattaatcatgcat |
1991660 |
T |
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| Q |
180 |
tttggggcatcccaatcaaatccactttgactgaggatatcacttactatctcgtaccatcctcgccaaagtttgat |
256 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
1991659 |
tttggggcatcccaatcaaatccactttgaccgagaatatcact---tatct-gtaccatcctcgccaaagtttgat |
1991587 |
T |
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