View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18280_low_2 (Length: 504)
Name: NF18280_low_2
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18280_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 51274117 - 51273629
Alignment:
| Q |
1 |
cctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaggccttcgagtacacggtcacgtttattgtgaccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
51274117 |
cctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaagccttctagtacacggtcacgtttattgtgaccg |
51274018 |
T |
|
| Q |
101 |
gttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51274017 |
gttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaaaca |
51273918 |
T |
|
| Q |
201 |
agccatttgaaaatccgacaattctcgaatataagacatgnnnnnnncttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatga |
300 |
Q |
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| T |
51273917 |
agccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatga |
51273818 |
T |
|
| Q |
301 |
aatttgattttcaggagtagaaagattaagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttttct |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273817 |
aatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttttct |
51273718 |
T |
|
| Q |
401 |
tgttctttcatttgttggagcaaagtatggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctt |
489 |
Q |
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| T |
51273717 |
tgttctttcatttgttggagcaaagtatggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctt |
51273629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 48403146 - 48403187
Alignment:
| Q |
351 |
gaagtttacgctttgagataaaattgaagtgccattttttct |
392 |
Q |
| |
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| T |
48403146 |
gaagtttacactttgagataaaattgaagtgccattctttct |
48403187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 53 - 350
Target Start/End: Complemental strand, 14908094 - 14907797
Alignment:
| Q |
53 |
ggttcacaaacaaggccttcgagtacacggtcacgtttattgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
152 |
Q |
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| T |
14908094 |
ggttcgcaaacaaagccttcatgtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgt |
14907995 |
T |
|
| Q |
153 |
tgcatacatggtagactctaccacgtgtggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgnnnnnnncttgt |
252 |
Q |
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|||| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||| ||||| |
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| T |
14907994 |
tgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgt |
14907895 |
T |
|
| Q |
253 |
tatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaatga |
350 |
Q |
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| T |
14907894 |
tatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggttttcaggagtagaaagattgagattgggtgagaacgaaatga |
14907797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 14907773 - 14907713
Alignment:
| Q |
423 |
aagtatggtgatgaagaattgatcgttcaatgaattggagctgtgaga-ttaaagctaaga |
482 |
Q |
| |
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||||||||||||||| ||| |||| ||||||||||||||| | ||| | |||||||||||| |
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| T |
14907773 |
aagtatggtgatgaataatggatcattcaatgaattggagatttgaaatttaaagctaaga |
14907713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 208 - 489
Target Start/End: Original strand, 5051458 - 5051740
Alignment:
| Q |
208 |
tgaaaatccgacaattctcgaatataagacatgnnnnnnncttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttga |
307 |
Q |
| |
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||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||| ||| ||||||| | | |||||||| |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataagg-atgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttgg |
5051556 |
T |
|
| Q |
308 |
ttttcaggagtagaaagattaagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctt |
407 |
Q |
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||| ||||||||||||||| ||||| | ||||||| | | ||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
5051557 |
tttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgcta-cttttctggttttcttcttctt |
5051655 |
T |
|
| Q |
408 |
tcatttgttggagcaaagta---tggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctt |
489 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||| || |||||| ||||||||||||||||||||| |||||||| ||||| |
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| T |
5051656 |
tcatttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctt |
5051740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5051302 - 5051458
Alignment:
| Q |
1 |
cctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaggccttcgagtacacggtcacgttta-ttg |
94 |
Q |
| |
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|||||||||||||||||||||||| |||||| || | | ||||||||| |||||||| ||||| | ||||||||||||||||||||||||| || |
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| T |
5051302 |
cctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttatttc |
5051400 |
T |
|
| Q |
95 |
tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
152 |
Q |
| |
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||||||||| || || |||||||||||||||||||||||||||||| | |||||||| |
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| T |
5051401 |
tgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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