View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18280_low_3 (Length: 401)
Name: NF18280_low_3
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18280_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 35381081 - 35380703
Alignment:
| Q |
13 |
gagatggaaactgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgt |
112 |
Q |
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| T |
35381081 |
gagatggaaactctgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgt |
35380982 |
T |
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| Q |
113 |
gcatatttagcgttgtagacggaggagaagatgacggcggtgtttataacggactcgtctaagttgtgaatgacatgcgtgcgcctggcctccaccattg |
212 |
Q |
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| T |
35380981 |
gcatatttagcgttgtagacggaggagaggatgacggcggtgtttataacggactcgtctaagttgtgaatgacgtgcgtgcgcctggcctccaccattg |
35380882 |
T |
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| Q |
213 |
ttccatggcgagttgtacaccaatatttgatgcttaagaagaggattttcat------------cagaaccacccctacgaagagcatgggnnnnnnnnt |
300 |
Q |
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| T |
35380881 |
ttccatggcgagttgtacaccaatatttgatgcttaagaagaggattttcatcaggatcttcaccagaaccacccctacgaagagcatgggaaaaaaaat |
35380782 |
T |
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| Q |
301 |
aaaaggattcataattaatgaaggagatgaggcgtgatggtgatactgttccatgtgcggctgagttggagctatggtc |
379 |
Q |
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| T |
35380781 |
aaaaggattcataattaatgaaggagatgaggcgtgatggtgatactgttccatgtgcggctgagttggagctatggtc |
35380703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 35374827 - 35374708
Alignment:
| Q |
13 |
gagatggaaactgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgt |
112 |
Q |
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| T |
35374827 |
gagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgttt |
35374728 |
T |
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| Q |
113 |
gcatatttagcgttgtagac |
132 |
Q |
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| T |
35374727 |
gcatacttagcagtgtagac |
35374708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35351734 - 35351663
Alignment:
| Q |
13 |
gagatggaaactgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaat |
84 |
Q |
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| T |
35351734 |
gagatggaaaatgtgggaacaaagagggagggtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35351663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35356868 - 35356797
Alignment:
| Q |
13 |
gagatggaaactgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaat |
84 |
Q |
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| T |
35356868 |
gagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35356797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 35374494 - 35374450
Alignment:
| Q |
334 |
gtgatggtgatactgttccatgtgcggctgagttggagctatggt |
378 |
Q |
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| T |
35374494 |
gtgatggtgatagtgatgcatgtgcggctgagttggagctgtggt |
35374450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 10696773 - 10696703
Alignment:
| Q |
13 |
gagatggaaactgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaa |
83 |
Q |
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| T |
10696773 |
gagatggaaagtgtgggaacaaagaggcagggtgcgaatgcgatcattgtctttaaattcatccaaacaaa |
10696703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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