View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18280_low_5 (Length: 349)
Name: NF18280_low_5
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18280_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 39236061 - 39235713
Alignment:
| Q |
1 |
tcatcattctgttacaccaccaagggggcatcaatctgtttttaatacagaaaggttgtgattgtgattatattttgttggttcctaatacttggtgtga |
100 |
Q |
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| T |
39236061 |
tcatcattctgttacaccaccaagggggcatcaatctgtttttaatacagaaaggttgtgattgtgattatattttgttggttcctaatacttggtgtga |
39235962 |
T |
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| Q |
101 |
caacaaaataataacttcttctactaacttttcttcttttatttttaacttttgaattagatgttcatgtgtaagaattatttgcttttataactcctgt |
200 |
Q |
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| T |
39235961 |
caaaaaaataattacttcttctactaacttttcttcttttatttttaacttttgaattagatgttcatgtgtaagaattatttgcttttataactcctgt |
39235862 |
T |
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| Q |
201 |
acaaaatgtacaaacaaggatacaatatcattatgtaatagaagtgcaattttttagctcaatgtgtgatataatttgacaattagattttaacagttat |
300 |
Q |
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| T |
39235861 |
acaaaatgtacatacaaggatacaatatcattatgtaatagaagtgcaattttttagctcaatgtgtgatataatttgacaattagattttaacagttat |
39235762 |
T |
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| Q |
301 |
tgtccaaactttcattttgttttggctgatatgaataagaattgagaac |
349 |
Q |
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| T |
39235761 |
tgtccaaactttcattttgttttggctgatatgaataagaattgagaac |
39235713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 39235504 - 39235447
Alignment:
| Q |
236 |
taatagaagtgcaattttttagctcaatgtgtgatataatttgacaattagattttaa |
293 |
Q |
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| T |
39235504 |
taatagaagtgcaatttcttagctcaacgtgtgatataatttgacaattagattttaa |
39235447 |
T |
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