View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18280_low_8 (Length: 300)

Name: NF18280_low_8
Description: NF18280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18280_low_8
NF18280_low_8
[»] chr1 (16 HSPs)
chr1 (14-284)||(48179339-48179609)
chr1 (71-279)||(47873854-47874062)
chr1 (72-232)||(40140972-40141136)
chr1 (92-226)||(2417749-2417886)
chr1 (79-228)||(40027189-40027337)
chr1 (71-228)||(49287413-49287567)
chr1 (82-286)||(33860546-33860750)
chr1 (82-286)||(33920173-33920377)
chr1 (91-226)||(37847219-37847359)
chr1 (82-282)||(45196748-45196954)
chr1 (73-289)||(49440278-49440494)
chr1 (66-148)||(41186128-41186210)
chr1 (157-282)||(49540497-49540622)
chr1 (99-172)||(49540418-49540491)
chr1 (250-283)||(40027131-40027164)
chr1 (162-226)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (80-283)||(14964282-14964485)
chr3 (81-147)||(540434-540500)
chr3 (79-147)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (91-232)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (89-232)||(31266823-31266969)
chr5 (107-148)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (84-147)||(34606051-34606114)
chr6 (84-147)||(34727328-34727391)
chr6 (84-147)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 48179609 - 48179339
Alignment:
Q  14 cacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179609 cacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 48179510  T
Q  114 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179509 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 48179410  T
Q  214 tcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 284  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179409 tcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 279
Target Start/End: Complemental strand, 47874062 - 47873854
Alignment:
Q  71 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 170  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  47874062 taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 47873963  T
Q  171 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct 270  Q
    || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| ||    
T  47873962 gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct 47873863  T
Q  271 ctcatatcc 279  Q
    |||||||||    
T  47873862 ctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 40141136 - 40140972
Alignment:
Q  72 aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- 170  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  171 --gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcat 232  Q
      || ||||||||| ||| || |||||||| || |||||||||||| ||||||||||||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
Q  92 agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa 188  Q
    ||||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||||||||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  189 tgcatttttgcaattttttatcatctcctgaatacaca 226  Q
    | ||||||||||||||||||||||| ||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 40027337 - 40027189
Alignment:
Q  79 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct 178  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||    
T  40027337 tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct 40027239  T
Q  179 ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 228  Q
    ||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  40027238 ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
Q  71 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 170  Q
    ||||||| |||| ||||  ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||    
T  49287567 taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat 49287468  T
Q  171 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 228  Q
       ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||    
T  49287467 ---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 286
Target Start/End: Complemental strand, 33860750 - 33860546
Alignment:
Q  82 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 181  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33860750 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33860651  T
Q  182 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 281  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33860650 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  282 acagg 286  Q
    |||||    
T  33860550 acagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 286
Target Start/End: Original strand, 33920173 - 33920377
Alignment:
Q  82 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 181  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33920173 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33920272  T
Q  182 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 281  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33920273 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  282 acagg 286  Q
    |||||    
T  33920373 acagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
Q  91 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 190  Q
    |||||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || |||||||||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  191 cattttt-----gcaattttttatcatctcctgaatacaca 226  Q
    |||||||      |||||| |||||||||||||||||||||    
T  37847259 catttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 282
Target Start/End: Complemental strand, 45196954 - 45196748
Alignment:
Q  82 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg-- 179  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga 45196855  T
Q  180 ----gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat 275  Q
        |||| ||||||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | |||||    
T  45196854 actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat 45196755  T
Q  276 atcccca 282  Q
    |||||||    
T  45196754 atcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 289
Target Start/End: Original strand, 49440278 - 49440494
Alignment:
Q  73 acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 172  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  |||||    
T  49440278 acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga 49440377  T
Q  173 agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct 272  Q
     ||  ||||||||| ||| | |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || ||||    
T  49440378 ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct 49440477  T
Q  273 catatccccacaggttc 289  Q
    |||||||||||| ||||    
T  49440478 catatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
Q  66 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 148  Q
    |||| ||||||  ||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186210 aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  157 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 256  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  257 tacacagagtttctctcatatcccca 282  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  99 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 172  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  250 gatgacatacacagagtttctctcatatccccac 283  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  162 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 226  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 80 - 283
Target Start/End: Complemental strand, 14964485 - 14964282
Alignment:
Q  80 gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg 179  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  180 gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 279  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||    
T  14964385 gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc 14964286  T
Q  280 ccac 283  Q
    ||||    
T  14964285 ccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 540434 - 540500
Alignment:
Q  81 tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 147  Q
    |||||||| || |||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540434 tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 485609 - 485677
Alignment:
Q  79 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 147  Q
    |||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| ||||||||    
T  485609 tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc 485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 32347364 - 32347505
Alignment:
Q  91 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 190  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  191 catttttgcaattttttatcatctcctgaatacacactgcat 232  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  32347464 catttttgcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 31266969 - 31266823
Alignment:
Q  89 gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa 188  Q
    |||| |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| ||||    
T  31266969 gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa 31266870  T
Q  189 tgcatttttgcaatt---ttttatcatctcctgaatacacactgcat 232  Q
    |||||||||||||||   |||||||||| |||||||| ||| |||||    
T  31266869 tgcatttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  107 gaataatctacttcatattgttgatgcctaaaacaccaatcg 148  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
Q  84 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 147  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606114 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
Q  84 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 147  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727391 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
Q  84 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 147  Q
    |||||||| | |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465645 aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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