View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_11 (Length: 350)
Name: NF18281_high_11
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 15067076 - 15067406
Alignment:
| Q |
1 |
ttagttagaagcagttataagtcaattacttgcgtagcaagtaatcggctaaggtagttagatttggctatccaatacatgttgtacatcataagctaac |
100 |
Q |
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| T |
15067076 |
ttagttagaagcagttataagtcaattacttgcgtagcaagtaatcggctaaggtagttagatttggctatccaatacatgttgtacatcataagctaac |
15067175 |
T |
|
| Q |
101 |
acagagaacaacttttgtacatatacctcttgtaacagcttcaataatcaatgagagtcattacttttcattcaattctttcaactcataatagaccaca |
200 |
Q |
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| T |
15067176 |
acagagaacaacttttgtacatatacctcttgtaacagcttcaataatcaatgagagtcattacttttcattcaattctttcaactcataatagaccaca |
15067275 |
T |
|
| Q |
201 |
ctctcatggtagagatgcacaaggtatataccaatatgattgatttttgtatcatacatttatctcttatagatgaagagtgtgatatcattgtacattt |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15067276 |
ctgtcatggtagagatgcacaaggtatataccaatatgattgatttttgtatcatacatttatctcttatagatgaagagtgtgatatcattgtacattt |
15067375 |
T |
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| Q |
301 |
tgatgaatattttctcttctagtggagaggc |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15067376 |
tgatgaatattttctcttctagtggagaggc |
15067406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 15055351 - 15055681
Alignment:
| Q |
1 |
ttagttagaagcagttataagtcaattacttgcgtagcaagtaatcggctaaggtagttagatttggctatccaatacatgttgtacatcataagctaac |
100 |
Q |
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||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15055351 |
ttagttagaagcagtcagaagtcaattacttgcatagcaagtaatcttctaaggtagttagatttggctatccaatacatgttgtacatcataagctaac |
15055450 |
T |
|
| Q |
101 |
acagagaacaacttttgtacatatacctcttgtaacagcttcaataatcaatgagagtcattacttttcattcaattctttcaactcataatagaccaca |
200 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15055451 |
atagagaacaacttttgtacatatacctcttgtaatagcttcaataatcaatgagagtcattacttttcattcaattctttcaactcataatagactaca |
15055550 |
T |
|
| Q |
201 |
ctctcatggtagagatgcacaaggtatataccaatatgattgatttttgtatcatacatttatctcttatagatgaagagtgtgatatcattgtacattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15055551 |
ctctcatggtagagatgcacaaggtatataccaatatgattgatttttgtatcatacatttatctcttatagatgaagagtgtgatatcattgtacattt |
15055650 |
T |
|
| Q |
301 |
tgatgaatattttctcttctagtggagaggc |
331 |
Q |
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||||||||| ||||||||||| ||||||||| |
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| T |
15055651 |
tgatgaatactttctcttctattggagaggc |
15055681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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