View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_13 (Length: 311)
Name: NF18281_high_13
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 2261032 - 2261313
Alignment:
| Q |
11 |
cacagattgaacagcaacgagctttggcagctggagtgaggtatccagtacagaatgaataaagtaaaatgaaagaaatggtgattagatcatgtattaa |
110 |
Q |
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| T |
2261032 |
cacagattgaacagcaacgagctttggcagctggagtgaggtatccagtacagaatgaataaagtaaaatgaaagaaatggtgattagatcatgtattaa |
2261131 |
T |
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| Q |
111 |
gaannnnnnnncttttctacttttcatgttaaatcttttctagtttcgtaaggctgagggcacatctttcctgttttagacaaaccaagctaaacatatc |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2261132 |
gaattttttt-cttttctacttttcatgttaaatcttttctagtttcgtaaggctgagggcacatctttcctgttttagacaaaccaagttaaacatatc |
2261230 |
T |
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| Q |
211 |
ttttttacttggttgggtagggaatagaaaaaatannnnnnnctcactagattgtgtggattctcttatttatgtggtagatt |
293 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2261231 |
ttttttacttggttgggtagggaatagaaaaaaaagggggggctcactagattgtgtggattctcttatttatgtggtagatt |
2261313 |
T |
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