View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_18 (Length: 204)
Name: NF18281_high_18
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 6234112 - 6234283
Alignment:
| Q |
16 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6234112 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagcttgcctggttagagtccatcttatcttgttaatatgaaattaatcaactgaata |
6234211 |
T |
|
| Q |
116 |
aattgaagattataagaaataattgaattgatgattaatgttgagatataactgtatatataggcaaagttt |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6234212 |
aattgaagattataagaaataattgaattgatgattaatgttgagatataactgtatatataggcaaagttt |
6234283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6239021 - 6239163
Alignment:
| Q |
16 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaata |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6239021 |
agaagggaaacctgggtttgacccttggcctgtccagcattgtagcttgcctggttagagtccatcttgtcttgtgaatatgaaattaatcaactgaata |
6239120 |
T |
|
| Q |
116 |
aattgaagattataagaaataattgaattgatgattaatgttg |
158 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |
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| T |
6239121 |
tattgaagattataagaaataattgaatgaaagattaatgttg |
6239163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6226401 - 6226543
Alignment:
| Q |
16 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaata |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
6226401 |
agaagggaaacctgagtttggcccttggcctgtccagcattgtagcttgcctgattggagtccatcttatcttgtgaatatgaaattaatcaactgaata |
6226500 |
T |
|
| Q |
116 |
aattgaagattataagaaataattgaattgatgattaatgttg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
6226501 |
aattgaagattataagaaataattgaatgaaagattaatgttg |
6226543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 6253038 - 6253163
Alignment:
| Q |
15 |
aagaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaat |
114 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||| || |
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| T |
6253038 |
aagaaaggaaacctgggtttggcccttggcctgtccagcattgtagcttgtctggttagagtccatcttg---tgtgaatatgaaattaatcaactggat |
6253134 |
T |
|
| Q |
115 |
aaattgaagattataagaaataattgaat |
143 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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| T |
6253135 |
aaattgaaaattataagaaataattgaat |
6253163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6272810 - 6272952
Alignment:
| Q |
16 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaata |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
6272810 |
agaacggaaacctgggtttggcccttggcctgtccagcattaaaacttgcattgttagagtccatcttgtcttgtgaatatgaatttaatcaactaaatg |
6272909 |
T |
|
| Q |
116 |
aattgaagattataagaaataattgaattgatgattaatgttg |
158 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||||||| |
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|
| T |
6272910 |
aattgaagattataagaaatatttgaatgaaagattaatgttg |
6272952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 6247862 - 6247983
Alignment:
| Q |
19 |
agggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaataaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||| ||| ||||||||||||||||||||||| ||| |
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|
| T |
6247862 |
agggaaacctgggtttggcccttggcctgtccagcattatagcttgcattgttagagtccatcttg---tgtgaatatgaaattaatcaactgaatgaat |
6247958 |
T |
|
| Q |
119 |
tgaagattataagaaataattgaat |
143 |
Q |
| |
|
||||||||||| |||||| |||||| |
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|
| T |
6247959 |
tgaagattataggaaatatttgaat |
6247983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6280578 - 6280723
Alignment:
| Q |
16 |
agaagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttaga---gtccatcttgtcttgttaatatgaaattaatcaactga |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||| |||| | |||||| ||||||||| |||||| ||||||||||||||||||||| |
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| T |
6280578 |
agaagggaaacctgggtttggcccttgatctgaccagcattgtagcttgcattgttagaagagtccatcttatcttgtgaatatgaaattaatcaactga |
6280677 |
T |
|
| Q |
113 |
ataaattgaagattataagaaataattgaattgatgattaatgttg |
158 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||| | ||||||||||| |
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|
| T |
6280678 |
atgaattgaagattatgagaaatagttgaatgaaagattaatgttg |
6280723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 6259437 - 6259549
Alignment:
| Q |
18 |
aagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaataaa |
117 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||| ||||| ||||||||||||||| ||| || |
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|
| T |
6259437 |
aagggaaacctgggtttggccttgggcctgtccagcattgtagcttgcgttattagagtccatcttatcttg------tgaaattaatcaactaaatgaa |
6259530 |
T |
|
| Q |
118 |
ttgaagattataagaaata |
136 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
6259531 |
ctgaagtttataagaaata |
6259549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 6263982 - 6264096
Alignment:
| Q |
32 |
tttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgt--cttgttaatatgaaattaatcaactgaat-aaattgaagattat |
128 |
Q |
| |
|
|||||||||||| ||||||||||| | || | || | |||||||||||| || | ||||| ||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
6263982 |
tttggcccttggtctgtccagcatggaagctcgcatcgttagagtccatattttatcttgtgaatatgaaattaatcaactaaatggaattgaagattat |
6264081 |
T |
|
| Q |
129 |
aagaaataattgaat |
143 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
6264082 |
aagaaagaatcgaat |
6264096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 6248002 - 6248042
Alignment:
| Q |
147 |
tgattaatgttgagatataactgtatatataggcaaagttt |
187 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
6248002 |
tgattagtgttgagatttaactgtatatataggcaaagttt |
6248042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 6272957 - 6272993
Alignment:
| Q |
151 |
taatgttgagatataactgtatatataggcaaagttt |
187 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6272957 |
taatgttgagatttaactgtatatataggcaaagttt |
6272993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 182
Target Start/End: Original strand, 6226544 - 6226579
Alignment:
| Q |
147 |
tgattaatgttgagatataactgtatatataggcaa |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6226544 |
tgattaatgttgagatttaactgtatatataggcaa |
6226579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 6239164 - 6239204
Alignment:
| Q |
147 |
tgattaatgttgagatataactgtatatataggcaaagttt |
187 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
6239164 |
tgattaatgttgagatttaactgtatatatatgaaaagttt |
6239204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 24469725 - 24469850
Alignment:
| Q |
18 |
aagggaaacctgggtttggcccttggcctgtccagcattgtagtttgcctggttagagtccatcttgtcttgttaatatgaaattaatcaactgaataaa |
117 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||| ||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
24469725 |
aagggaaacctgggtttggccctgggcttgtcccgcattatagcttgcattgttagagtccatcttgtcttgtgaatatgaaattaatcaactgaatgaa |
24469824 |
T |
|
| Q |
118 |
ttgaagattataagaaataattgaat |
143 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
24469825 |
ttgaagattataagaaatatttgaat |
24469850 |
T |
|
Back To:
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