View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_2 (Length: 714)
Name: NF18281_high_2
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 21 - 699
Target Start/End: Complemental strand, 38567353 - 38566675
Alignment:
| Q |
21 |
tatggatatgtgtatttttaggtctcttggccaggcatcaccaagtatgagtgcttttgccgcgggtcaggcggcggcttacaaaatgtttgaaacaatt |
120 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||| | || ||||||||||||| || |||| |||||||||||||||||||||||| |||||| |
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| T |
38567353 |
tatggatatgtatttttttaggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcgggcggcggcttacaaaatgtttgagacaatt |
38567254 |
T |
|
| Q |
121 |
aagagaaagccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccgg |
220 |
Q |
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|| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567253 |
aaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccgg |
38567154 |
T |
|
| Q |
221 |
caagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567153 |
caagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaat |
38567054 |
T |
|
| Q |
321 |
tatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggatcagagggaaa |
420 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567053 |
tatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggatcagagggaaa |
38566954 |
T |
|
| Q |
421 |
attggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaagatggagcaacgattgaagaaataagatctg |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
38566953 |
attggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaagatggagcaacgattgaagagataagatctg |
38566854 |
T |
|
| Q |
521 |
catctgaacttgcaaacgctgccaaattcattgataaactgccacaggttctagattctaaccaggctttgataccatgttactgaagtatcttatttat |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566853 |
catctgaacttgcaaacgctgccaaattcattgataaactgccccaggttctagattctaaccaggctttgataccatgttactgaagtatcttatttat |
38566754 |
T |
|
| Q |
621 |
tgataacttgtccagattgatcaataatgaacaaaagagtctatttatatatttgaatgcaaaataaaatgaagaagat |
699 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566753 |
tgataacttgtccagattgatcaataatgaacaaaagagtctatttatatatttgaatgcaaaataaaatgaagaagat |
38566675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 38526231 - 38525665
Alignment:
| Q |
18 |
tcttatggatatgtgtatttttaggtctcttggccaggcatcaccaagtatgagtgcttttgccgcgggtcaggcggcggcttacaaaatgtttgaaaca |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
38526231 |
tcttatggatatgtgtatttttaggtctcttggccaggcatcaccaagtatgagtgcttttgcggcgggtcaggcggcggcttacaaaatgtttgagaca |
38526132 |
T |
|
| Q |
118 |
attaagagaaagccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatc |
217 |
Q |
| |
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||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38526131 |
attaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgagatagagttgaaagaagtttatttcagttatc |
38526032 |
T |
|
| Q |
218 |
cggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgac |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||| || |
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| T |
38526031 |
cggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcattggttggacaaagtggaagtggaaagtccac |
38525932 |
T |
|
| Q |
318 |
aattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggatcagaggg |
417 |
Q |
| |
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| |||| | ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
38525931 |
agttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaacatgaaagaacttcagcttaggtggatcagaggg |
38525832 |
T |
|
| Q |
418 |
aaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaagatggagcaacgattgaagaaataagat |
517 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
38525831 |
aaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatatggtaaagatggagcaacaattgaagaaataagat |
38525732 |
T |
|
| Q |
518 |
ctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttctagattctaacca |
584 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
38525731 |
ctgcatccgaacttgcaaacgccgccaaattcattgataaacttccacaggttcttgattccaacca |
38525665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 569
Target Start/End: Original strand, 51199472 - 51199755
Alignment:
| Q |
286 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaaca |
385 |
Q |
| |
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||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| || || || | ||| |
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| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttctcattgacggtgtcaacc |
51199571 |
T |
|
| Q |
386 |
tgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacgg |
485 |
Q |
| |
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| ||||||||||| | | ||||||||| |||||| || || || |||||||| || || | ||| | | ||||||||| || |||||| |||| || |
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| T |
51199572 |
tcaaagaatttcaactgaaatggatcagacagaaaataggcctagtcagccaggaacctgttctctttacttgcagcattaaagagaacattgcatatgg |
51199671 |
T |
|
| Q |
486 |
taaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggt |
569 |
Q |
| |
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|| ||||| || || ||||||||| ||| ||||| | || ||||| || ||||||||||| || |||||||| || ||||| |
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| T |
51199672 |
caaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaatttatagataaacttcctcaggt |
51199755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
211 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
309 |
Q |
| |
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|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
|
| Q |
310 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
351 |
Q |
| |
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|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
211 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
309 |
Q |
| |
|
|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
|
| Q |
310 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
351 |
Q |
| |
|
|| || ||| || | | |||| |||||||||||||||||||| |
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|
| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
286 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
368 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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