View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_4 (Length: 564)
Name: NF18281_high_4
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 254 - 558
Target Start/End: Original strand, 26577783 - 26578087
Alignment:
| Q |
254 |
ataaggatgattgttgaccttatctagctaatgcttataacctgcacacatgaacacacagttagtagagatatattattcctttgctttaatttgttat |
353 |
Q |
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| T |
26577783 |
ataaggatgattgttgaccttatctagctaatgcttataacctgcacacatgaacacacagttagtagagatat--tactcctttgctttaatttgttat |
26577880 |
T |
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| Q |
354 |
catcaaaatattatgatcctcttagaattttaattaatagaccttcttttatgagttgatggtaattacccta--cctagttctccttttgatttttgat |
451 |
Q |
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| T |
26577881 |
catcaaaatattatgatcctcttagaattttaattaatagaccttcttttatgagttgatggtaattaccctagacctagttctccttttgatttttgat |
26577980 |
T |
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| Q |
452 |
ttgtcaaacatcaacacaaagggtttgacagtaatagtgatgacatctcgagtattggatcttgagcttctacataagggtcttgttctagaaaaatcat |
551 |
Q |
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| T |
26577981 |
ttgtcaaacatcaatacaaagggtttgacagtaatagtgatgacatctcaagtattggatcttgagcttctacataagggtcttgttctagaaaaatcat |
26578080 |
T |
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| Q |
552 |
taatttt |
558 |
Q |
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| T |
26578081 |
taatttt |
26578087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 26577540 - 26577747
Alignment:
| Q |
11 |
ttattcttgatggaaaaatgacttcatatgatattgtatagaaaaatgtcctcacgagacaaatgactctaggtcaaatgaatgcttcaaccatccttga |
110 |
Q |
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| T |
26577540 |
ttattcttgatggaaaaatgacttcatatgatattgtatagaaaaatgtcctcaccagacaaacgactctaggtcaaatgaatgcttcaaccatccttga |
26577639 |
T |
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| Q |
111 |
ctatatcagatgctttaagatatgattaaatgaaatccttatgcatgttgactagtgttgagctggtttttcattattctttatgtctagataatggaca |
210 |
Q |
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| T |
26577640 |
ccatatcagatgctttaagatatgattaaatgaaatccttatgcatgttgactagtgttgagctggtttttcattattctttatgtctagataatgggca |
26577739 |
T |
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| Q |
211 |
tggttgta |
218 |
Q |
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| T |
26577740 |
tggttgta |
26577747 |
T |
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Back To:
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