View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_5 (Length: 527)
Name: NF18281_high_5
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 223 - 527
Target Start/End: Original strand, 372304 - 372608
Alignment:
| Q |
223 |
cttgaccattgttcttgaccgagcaagtgctcaaaggcctattaacttagactcaataactaaacaaacccgaatccagcatttaggtagcttactcgta |
322 |
Q |
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| T |
372304 |
cttgaccattgttcttgaccgagcaagtgctcaaaggcccattaacttagactcaataactaaacaaacccgaatctagcatttaggtagcttactcgca |
372403 |
T |
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| Q |
323 |
gcacaacccctctggacgagggaggtgctcgtagcacactggagacccattcaaatgattttaatgtctccaaacgtgcgtgtgaatctctttctcggca |
422 |
Q |
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| T |
372404 |
gcacaacccctctggacgagggaggtgctcgtagcacactggagacccgttcaaatgattgtaatgtctccaaacgtgcgtgcgaatctctttctcggaa |
372503 |
T |
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| Q |
423 |
attatgattcctacggattcataaccgtcgaacaccatgtgtgccaaacaacggccctacaacctccacattatataaaagggattcttagcagtcccca |
522 |
Q |
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| T |
372504 |
attatgattcctacggtatcacaaccgtcgaacaccatgtgtgccaaacaacggccctacaacctccacattatataaaggggattcttagcagtcccca |
372603 |
T |
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| Q |
523 |
atatt |
527 |
Q |
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||||| |
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| T |
372604 |
atatt |
372608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 372100 - 372191
Alignment:
| Q |
19 |
gtagcaggttggagatgacatggtataaaagtttggattaaaatgttgnnnnnnnnnnnngacaaaacaagatgatgtgtggtaggaaaagtgg |
112 |
Q |
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| T |
372100 |
gtagcaggttggagatgacatggtataaaagtttgggttaaaatgtt--tttttttttttgacaaaacaagatgatgtgtggtaggaaaagtgg |
372191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 523
Target Start/End: Complemental strand, 32054003 - 32053941
Alignment:
| Q |
461 |
gtgtgccaaacaacggccctacaacctccacattatataaaagggattcttagcagtccccaa |
523 |
Q |
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| T |
32054003 |
gtgtgccacacaacgaccctacaacctcaacattatataaaaaggactctcagcagtgcccaa |
32053941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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