View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_high_9 (Length: 400)
Name: NF18281_high_9
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 25901146 - 25901529
Alignment:
| Q |
1 |
agagaacatgaagacccatctattctagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaagactatatgttgtctaaataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901146 |
agagaacatgaagacccatctattctagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaagactatatgttgtctaaataca |
25901245 |
T |
|
| Q |
101 |
attgattacctaattaagaaagactatatatagcattaggcatatgatgaattaaaaatcagcaataaaattaagtatccnnnnnnnttaatattactct |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25901246 |
attgattacctaactaagaaagactatatatagcattaggcatatgatgaattaaaaatcagcaataaaattaagtatccaaaaaaattaatattactct |
25901345 |
T |
|
| Q |
201 |
ctcggctcctttttaaccgtcaaataaaagttatttacatacacattgaactttaaaaatggcagagaaatgaaaacacatttttactacaaatgcgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25901346 |
ctcggctcctttttaaccgtcaaataaaagttatttacatacacattgaactttaaaaatggcaaagaaatgaaaacacatttttactacaaatgcgaca |
25901445 |
T |
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| Q |
301 |
attaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataac |
384 |
Q |
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| T |
25901446 |
attaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataac |
25901529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 384
Target Start/End: Original strand, 52002406 - 52002551
Alignment:
| Q |
243 |
acattgaactttaaaaatggcagagaaatgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagt----agtaactaatgtacct |
338 |
Q |
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||||||||||||||||| | | ||||||||||||||||||||||||||| |||||| |||||| ||||| |||| | | |||||||||||||||| |
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| T |
52002406 |
acattgaactttaaaaacgacgaagaaatgaaaacacatttttactacaactgcgacgtttaaaaagtaactaaggaattagtaagtaactaatgtacct |
52002505 |
T |
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| Q |
339 |
ctgagcaagaagcctgcattgtgaaatcattgaaacagctaataac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002506 |
ctgagcaagaagcctgcattgtgaaatcattgaaacagctaataac |
52002551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29199322 - 29199243
Alignment:
| Q |
1 |
agagaacatgaagacccatctattctagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
80 |
Q |
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||||||||||| || ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199322 |
agagaacatgacgatccaactgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
29199243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 52002173 - 52002311
Alignment:
| Q |
99 |
caattgattacctaattaagaaagactatatatagcattaggcatatgatgaattaaaaatcagcaataaaattaagtatccnnnnnnnttaatattact |
198 |
Q |
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||||||||||||||| ||||||||||||| |||| || |||| ||||||| ||||||||||| |||||| |||||||| ||||||||||| |
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| T |
52002173 |
caattgattacctaactaagaaagactatgtatactat----catacgatgaatgaaaaatcagcactaaaataaagtatccaaaaaaattaatattact |
52002268 |
T |
|
| Q |
199 |
ctctcggctcctttttaaccgtcaaataaaagttatttacata |
241 |
Q |
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||||||||||||||||| ||||||| |||||| |||||||| |
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| T |
52002269 |
tcctcggctcctttttaacagtcaaattaaagttgtttacata |
52002311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 19768951 - 19768897
Alignment:
| Q |
26 |
tagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
80 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19768951 |
tagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
19768897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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