View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_low_3 (Length: 695)
Name: NF18281_low_3
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 49158944 - 49158501
Alignment:
| Q |
20 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacgcaatattgttcatgact |
119 |
Q |
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| T |
49158944 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacacaatattgttcatgact |
49158845 |
T |
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| Q |
120 |
cacattctatttacgtttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccc |
219 |
Q |
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| T |
49158844 |
cacattctatttacatttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccc |
49158745 |
T |
|
| Q |
220 |
cctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatttccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattt |
319 |
Q |
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| T |
49158744 |
cctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatttccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattt |
49158645 |
T |
|
| Q |
320 |
tccgctttactcaagtatgcaattatctagaataattgatgtttttgttgttgttctcctttgaacccgagagttataattgattgacattataaaatta |
419 |
Q |
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| T |
49158644 |
tccgctttactcaagtatgcaattatctagaataattgatgtttttgttgttgttctccttttaacccgagagttataattgattgacattataaaatta |
49158545 |
T |
|
| Q |
420 |
tgtacacggattatgtatatgaaatatgaattacattctattta |
463 |
Q |
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| T |
49158544 |
tgtacacggattatgtatatgaaatatgaactacattctattta |
49158501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 436 - 687
Target Start/End: Complemental strand, 49158485 - 49158234
Alignment:
| Q |
436 |
atatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccat |
535 |
Q |
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| T |
49158485 |
atatgaaatatgaattacattctatttataatgtgatatatgatgcatatgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccat |
49158386 |
T |
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| Q |
536 |
ctgccgttggttatcaaccaacattgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccat |
635 |
Q |
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| T |
49158385 |
ctgccgttggttatcaaccaacgttgtctactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccat |
49158286 |
T |
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| Q |
636 |
ctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
687 |
Q |
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| T |
49158285 |
ctatgtgcctgctgatgacttgacagatcctgctcctgctaccacctttgct |
49158234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 466 - 687
Target Start/End: Complemental strand, 49153526 - 49153304
Alignment:
| Q |
466 |
atgtgatatatgatgcat-atgcaattgtaggcaaactcagaggtgtctgcattgcttggtcgcatcccatctgccgttggttatcaaccaacattgtct |
564 |
Q |
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| T |
49153526 |
atgtgatatatgatgcctgatgtcactgtaggctaactcagaggtgtctgccctgcttggtcgtattccatctgcggttggttaccaaccaacattgtct |
49153427 |
T |
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| Q |
565 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagatc |
664 |
Q |
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| T |
49153426 |
actgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacatctgtccaggctatctatgtgcctgctgatgacttgacagatc |
49153327 |
T |
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| Q |
665 |
ctgctcctgctaccacctttgct |
687 |
Q |
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| T |
49153326 |
ctgctcctgctaccacctttgct |
49153304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 49154728 - 49154564
Alignment:
| Q |
172 |
cagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactgttgctgaacatt |
271 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||| ||| | ||||||||||| |||| |
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| T |
49154728 |
cagagtgagagcaaatgtgctcttgtctacggtcaaatgaatgagccccctggtgctcgtgcccgtgtcggtcttactggacttactgttgctgagcatt |
49154629 |
T |
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| Q |
272 |
tccgtgatgctgaaggacaagatgtgcttcttttcgtcgataacattttccgctttactcaagta |
336 |
Q |
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| T |
49154628 |
tccgtgatgctgaaggacaagatgtgcttcttttcgttgacaacattttccgctttactcaagta |
49154564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 49154896 - 49154815
Alignment:
| Q |
20 |
agaacgaacccgagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaac |
101 |
Q |
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|||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| || || ||||||||||| |
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| T |
49154896 |
agaaagaacccgagagggtaatgacttgtacagagaaatgattgagagtggtgtcattaagctgggtgaaaagcaggtgaac |
49154815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 563
Target Start/End: Original strand, 27960569 - 27960615
Alignment:
| Q |
517 |
ttgcttggtcgcatcccatctgccgttggttatcaaccaacattgtc |
563 |
Q |
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| T |
27960569 |
ttgcttggtcgtatcccatcggctgttggttatcaaccaacactgtc |
27960615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 27960289 - 27960350
Alignment:
| Q |
170 |
ttcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgt |
231 |
Q |
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| T |
27960289 |
ttcagagtcaaagcaaatgtgcgtttgtgtgtggtcaaataaatgacccccctggtgctcgt |
27960350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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