View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_low_6 (Length: 494)
Name: NF18281_low_6
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 6967734 - 6967250
Alignment:
| Q |
1 |
caatgagtgcatgaacttgatgaggacaataactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967734 |
caatgagtgcatgaacttgatgaggacaataactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaa |
6967635 |
T |
|
| Q |
101 |
catgnnnnnnnnnnctcttctactttgtactactttgtttctttgtttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967634 |
catgttttttttttctcttctactttgtactactttgtttctttgtttaaactctattggtcttgtgtatacatataggctaggaacatttgtttctcat |
6967535 |
T |
|
| Q |
201 |
gtgtttgttacgtataaggacaaaatatgattatgagatgttgatagttgatcttgattcttgaatcagaattgcatgtctttttcatagtacactgttt |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6967534 |
gtgtttgttacgtataaggacaaaatatgatcatgagatgttgatagttgatcttgattcttgaatcagacttgcatgtctttttcatagtacactgttc |
6967435 |
T |
|
| Q |
301 |
cagaaacaggttggacttttgaccacatgcaaaagacaacatagccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967434 |
cagaaacaggttggacttttgaccacatgcaaaagacaacatagccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatga |
6967335 |
T |
|
| Q |
401 |
gtttagttaagtttgtagaattcatttaaactgaattagaacaaattaatgactattt-cataaattatagtgcccaaatctgtg |
484 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6967334 |
gtttagttaagtttgtagaattcatttaaactgatttagaacaaattaatgactatttccataaattatagtgcccaaatctgtg |
6967250 |
T |
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