View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_low_7 (Length: 481)
Name: NF18281_low_7
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 481
Target Start/End: Complemental strand, 55695986 - 55695519
Alignment:
| Q |
14 |
gagattgtgatgttggtatttctcattaggttttgacttcatacattcttgctcatgcagcaaatctactccctatactcaattcaagatatcagtttta |
113 |
Q |
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| T |
55695986 |
gagattgtgatgttggtatttctcattaggttttgacttcacacattcttgctcatgcagcaaatctactccctatactcaattcaagatatcaatttta |
55695887 |
T |
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| Q |
114 |
gcatctcagatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtc |
213 |
Q |
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| T |
55695886 |
gcatctcagatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtc |
55695787 |
T |
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| Q |
214 |
atcagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtg |
313 |
Q |
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| T |
55695786 |
attagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaatccctttccaaaaacatgttttctaattatcttgtg |
55695687 |
T |
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| Q |
314 |
gtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagtttcggcnnnnnnnnnnnnnnnnntataatttattcaaaccaggagaaata |
413 |
Q |
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| T |
55695686 |
gtgcactcttcccctctttctgaaatcctgtgagtaaattatgatagagttttggcaaaataaaaaagtaaaatataatttattcaaaccaggagaaata |
55695587 |
T |
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| Q |
414 |
cataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaaagccataccc |
481 |
Q |
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| T |
55695586 |
cataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaaagccataccc |
55695519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 126 - 366
Target Start/End: Original strand, 35803815 - 35804064
Alignment:
| Q |
126 |
ttatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtc------------ |
213 |
Q |
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| T |
35803815 |
ttatcatt-ttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagccaactttttaattcaaaattgcattatttttgttgtcatttttttt |
35803913 |
T |
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| Q |
214 |
atcagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtg |
313 |
Q |
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| T |
35803914 |
atcagttgcaatttt-taaggctctttaacttgccttttgataatgtggttttatttcttaaaatccctttacaaaagtttgttttctaattttcttgtg |
35804012 |
T |
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| Q |
314 |
gtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagtttc |
366 |
Q |
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| T |
35804013 |
gtgcactcct-ccctctttctgaaatcctttgggtaaattatgatagactttc |
35804064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 35804087 - 35804127
Alignment:
| Q |
387 |
tataatttattcaaaccaggagaaatacataatgaccaaac |
427 |
Q |
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| T |
35804087 |
tataatttattcaaaccagaagaaatacataatgaccaaac |
35804127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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