View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18281_low_8 (Length: 472)
Name: NF18281_low_8
Description: NF18281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18281_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 61 - 387
Target Start/End: Original strand, 35454713 - 35455045
Alignment:
| Q |
61 |
aaatatgtattttgaattctggcaataataca----agttaagaaatgtct-tgtcatttgagcatgtcacgttatattagagttgcattcaatatgaga |
155 |
Q |
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| T |
35454713 |
aaatatgtattttgaattttggcaataatacatacaagttaagaaatgtctctgtcatttgagcacgtcatgttatattagagttgcattcaatatgaga |
35454812 |
T |
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| Q |
156 |
aagtataaagaaatttacaagcatggattcttgatccattggaatttggtggtgatggagcatcaagataatgaaatt-aataaatatattgccgttttt |
254 |
Q |
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| T |
35454813 |
aagtataaagaaatttacaatcatggattcgtgatctattagaatttggtggtgatggagcatcaagataatgaaatttaatatatctattgtcgttttt |
35454912 |
T |
|
| Q |
255 |
atgacaaccaaactggaaaaatagcagggctagatacgaaatggatgtcttgaaattaatttatattaattgcaacatcttaacaagtaatcacacgaat |
354 |
Q |
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| T |
35454913 |
attgcaaccaaatcggaaaaagagcagggctagatacgaaatggatgtcttgaaattaatttatatttattgcaacatcttaacaagtaatcacacgaat |
35455012 |
T |
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| Q |
355 |
ttacatatgtatacagatatggacaagttaatt |
387 |
Q |
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| T |
35455013 |
ttacatatatatacagatatggaaaagttaatt |
35455045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 35455048 - 35455088
Alignment:
| Q |
419 |
acatagaaatcacagagtaaattagcaaggatgagaaaact |
459 |
Q |
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| T |
35455048 |
acatagaaatcacagagtaaattagcaaggatgagaaaact |
35455088 |
T |
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